helmsdeep-open/docker-compose.yml at main · TalusBio/helmsdeep-open · GitHub

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services:

  mysql:
    image: mysql:8.0
    restart: unless-stopped
    environment:
      MYSQL_ROOT_PASSWORD: ${MYSQL_ROOT_PASSWORD:-helmsdeep_root}
      MYSQL_DATABASE: ${MYSQL_DATABASE:-helmsdeep}
      MYSQL_USER: ${MYSQL_USER:-helmsdeep}
      MYSQL_PASSWORD: ${MYSQL_PASSWORD:-helmsdeep}
    ports:
      - "3306:3306"
    volumes:
      - mysql_data:/var/lib/mysql
    healthcheck:
      test:
        [
          "CMD-SHELL",
          "mysqladmin ping -h 127.0.0.1 -u$${MYSQL_USER} -p$${MYSQL_PASSWORD} --silent",
        ]
      interval: 5s
      timeout: 5s
      retries: 20
      start_period: 20s

  api:
    build:
      context: .
      dockerfile: Dockerfile.api
    restart: unless-stopped
    depends_on:
      mysql:
        condition: service_healthy
    env_file:
      - path: .env
        required: false
    environment:
      DATABASE_URL: "mysql+mysqlconnector://${MYSQL_USER:-helmsdeep}:${MYSQL_PASSWORD:-helmsdeep}@mysql/${MYSQL_DATABASE:-helmsdeep}"
      ENV: "${ENV:-development}"
    ports:
      - "8000:8000"
    healthcheck:
      test:
        [
          "CMD",
          "/app/.venv/bin/python",
          "-c",
          "import socket; socket.create_connection(('127.0.0.1', 8000), timeout=2).close()",
        ]
      interval: 10s
      timeout: 5s
      retries: 12

  ui:
    build:
      context: .
      dockerfile: Dockerfile.streamlit
    restart: unless-stopped
    depends_on:
      api:
        condition: service_healthy
    env_file:
      - path: .env
        required: false
    environment:
      API_URL: "http://api:8000"
      HELMSDEEP_DEV_USER: "${HELMSDEEP_DEV_USER:-admin}"
    ports:
      - "8501:8501"

volumes:
  mysql_data: