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cff-version: 1.2.0
message: "If you use Tablassert, please cite it as below."
type: software
title: Tablassert
version: 20.0.0
license: Apache-2.0
repository-code: https://github.com/SkyeAv/Tablassert
abstract: Tablassert is a declarative knowledge graph backend for bioinformatics that extracts knowledge assertions from tabular data, performs entity resolution and data quality control, and exports NCATS Translator-compliant Knowledge Graph Exchange (KGX) NDJSON. Its mapping layer is a Rust extension with parallel, memory-capped builds.
authors:
- given-names: Skye Lane
family-names: Goetz
email: sgoetz@isbscience.org
affiliation: Institute for Systems Biology
orcid: "https://orcid.org/0009-0007-8373-2352"
- given-names: "Gwênlyn"
family-names: Glusman
email: gglusman@isbscience.org
affiliation: Institute for Systems Biology
orcid: "https://orcid.org/0000-0001-8060-5955"
- given-names: Jared C.
family-names: Roach
affiliation: Institute for Systems Biology
orcid: "https://orcid.org/0000-0003-4524-0107"
references:
- type: article
title: "MicrobiomeKG: bridging microbiome research and host health through knowledge graphs"
authors:
- given-names: Skye Lane
family-names: Goetz
- given-names: Amy K.
family-names: Glen
- given-names: "Gwênlyn"
family-names: Glusman
journal: Frontiers in Systems Biology
year: 2025
volume: 5
doi: "10.3389/fsysb.2025.1544432"