From cb83b4c05aee5e25477a34993f1aa4abe1135618 Mon Sep 17 00:00:00 2001 From: biancani_uri_edu Date: Sat, 9 Nov 2024 13:58:01 +0000 Subject: [PATCH] Update bbmap module name from bbmap/38.63 to bbmap/39.01 in all slurm_example_scripts for UNITY branch --- slurm_example_scripts/02_trimmer.slurm | 2 +- slurm_example_scripts/03_subset.slurm | 2 +- slurm_example_scripts/05_setup2.slurm | 2 +- 3 files changed, 3 insertions(+), 3 deletions(-) diff --git a/slurm_example_scripts/02_trimmer.slurm b/slurm_example_scripts/02_trimmer.slurm index e9cb586..08bb77f 100644 --- a/slurm_example_scripts/02_trimmer.slurm +++ b/slurm_example_scripts/02_trimmer.slurm @@ -16,7 +16,7 @@ module purge #CHANGE THIS IF NOT ON UNITY module load uri/main bio/Biopython/1.79-intel-2022a module load FastQC/0.11.9-Java-11 -module load bbmap/38.63 +module load bbmap/39.01 P=$SLURM_JOB_CPUS_PER_NODE diff --git a/slurm_example_scripts/03_subset.slurm b/slurm_example_scripts/03_subset.slurm index 9e76a0b..8642b62 100644 --- a/slurm_example_scripts/03_subset.slurm +++ b/slurm_example_scripts/03_subset.slurm @@ -16,7 +16,7 @@ module purge #CHANGE THIS IF NOT ON UNITY module load uri/main bio/Biopython/1.79-intel-2022a module load FastQC/0.11.9-Java-11 -module load bbmap/38.63 +module load bbmap/39.01 GENOME=1000000000 #CHANGE THIS to the approximate size of your genome DIR=../../SISRS_Small_test #CHANGE this to your analysis folder diff --git a/slurm_example_scripts/05_setup2.slurm b/slurm_example_scripts/05_setup2.slurm index 90da0ce..a6b43f1 100644 --- a/slurm_example_scripts/05_setup2.slurm +++ b/slurm_example_scripts/05_setup2.slurm @@ -15,7 +15,7 @@ module purge #CHANGE THIS IF NOT ON UNITY module load uri/main bio/Biopython/1.79-intel-2022a -module load bbmap/38.63 +module load bbmap/39.01 module load bio/SAMtools/1.14-GCC-11.2.0 module load bio/Bowtie2/2.4.5-GCC-11.3.0