From 2ac1789feb165c03a8cdb78e47c7d2a7677000d6 Mon Sep 17 00:00:00 2001 From: Claude Date: Thu, 18 Jun 2026 14:56:32 +0000 Subject: [PATCH 1/6] Replace MkDocs docs site with Great Docs Migrate the documentation site from MkDocs + Material to Great Docs (https://posit-dev.github.io/great-docs/), a Quarto-based docs generator for Python packages. - Add great-docs.yml with branding, authors, user-guide ordering, and an API reference covering pdf_reader and the pdfminer/pytesseract parsers - Move guide content into user_guide/*.qmd (parsers, multiprocessing, spaCy extensions, changelog, contributing); convert MkDocs admonitions to Quarto callouts. The landing page is generated from README.md, so the old docs/hooks.py README-copy trick is no longer needed - Add .github/workflows/docs.yml to build and deploy to GitHub Pages on every push to main (uv sync --all-extras so the pytesseract parser can be introspected) - Remove mkdocs.yml, the docs/ directory, and the mkdocs/mkdocstrings dev dependencies; refresh uv.lock - Update justfile (preview-docs/build-docs via uvx), CLAUDE.md, and the changelog project URL Great Docs runs via uvx (Python 3.11+) so it stays separate from the package's own Python 3.9+ dependency floor. Co-Authored-By: Claude Opus 4.8 Claude-Session: https://claude.ai/code/session_012GMFfCNP6RbewDcAKDbmf5 --- .github/workflows/docs.yml | 110 +++++ .gitignore | 4 +- CLAUDE.md | 15 +- .../user-astronaut-solid.svg | 0 docs/api/spacypdfreader.parsers.md | 5 - docs/api/spacypdfreader.spacypdfreader.md | 3 - docs/contributing.md | 55 --- docs/hooks.py | 5 - docs/index.md | 3 - great-docs.yml | 73 +++ justfile | 13 +- mkdocs.yml | 77 ---- pyproject.toml | 7 +- docs/changelog.md => user_guide/changelog.qmd | 4 +- user_guide/contributing.qmd | 63 +++ .../multiprocessing.qmd | 7 +- docs/parsers.md => user_guide/parsers.qmd | 37 +- .../spacy-extensions.qmd | 10 +- uv.lock | 433 ------------------ 19 files changed, 302 insertions(+), 622 deletions(-) create mode 100644 .github/workflows/docs.yml rename {docs/assets/images => assets}/user-astronaut-solid.svg (100%) delete mode 100644 docs/api/spacypdfreader.parsers.md delete mode 100644 docs/api/spacypdfreader.spacypdfreader.md delete mode 100644 docs/contributing.md delete mode 100644 docs/hooks.py delete mode 100644 docs/index.md create mode 100644 great-docs.yml delete mode 100644 mkdocs.yml rename docs/changelog.md => user_guide/changelog.qmd (99%) create mode 100644 user_guide/contributing.qmd rename docs/multiprocessing.md => user_guide/multiprocessing.qmd (97%) rename docs/parsers.md => user_guide/parsers.qmd (77%) rename docs/api/spacy-extensions.md => user_guide/spacy-extensions.qmd (87%) diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml new file mode 100644 index 0000000..eb3f180 --- /dev/null +++ b/.github/workflows/docs.yml @@ -0,0 +1,110 @@ +name: CI Docs + +on: + push: + branches: + - main + pull_request: + +jobs: + build-docs: + name: "Build Docs" + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v6 + with: + fetch-depth: 0 # Full history for accurate page timestamps + + - uses: actions/setup-python@v6 + with: + python-version: "3.12" + + - name: Install package and dependencies + run: | + python -m pip install uv + uv sync --all-extras + uv pip install great-docs + + - name: Set up Quarto + uses: quarto-dev/quarto-actions/setup@v2 + + - name: Build docs + run: uv run great-docs build + + - name: Save docs artifact + uses: actions/upload-artifact@v7 + with: + name: docs-html + path: great-docs/_site + include-hidden-files: true + + - name: Upload build timings + uses: actions/upload-artifact@v7 + with: + name: build-timings + path: great-docs/_site/build-timings.json + + publish-docs: + name: "Publish Docs" + runs-on: ubuntu-latest + needs: "build-docs" + if: github.ref == 'refs/heads/main' + permissions: + pages: write + id-token: write + environment: + name: github-pages + url: ${{ steps.deployment.outputs.page_url }} + steps: + - uses: actions/download-artifact@v7 + with: + name: docs-html + path: great-docs/_site + + - name: Upload Pages artifact + uses: actions/upload-pages-artifact@v5 + with: + path: great-docs/_site + include-hidden-files: true + + - name: Deploy to GitHub Pages + id: deployment + uses: actions/deploy-pages@v5 + + preview-docs: + name: "Preview Docs" + runs-on: ubuntu-latest + needs: "build-docs" + if: github.event_name == 'pull_request' + permissions: + deployments: write + pull-requests: write + steps: + - uses: actions/download-artifact@v7 + with: + name: docs-html + path: great-docs/_site + + # Start deployment + - name: Configure pull release name + if: ${{ github.event_name == 'pull_request' }} + run: | + echo "RELEASE_NAME=pr-${{ github.event.number }}" >> $GITHUB_ENV + + - name: Configure branch release name + if: ${{ github.event_name != 'pull_request' }} + run: | + # use branch name, but replace slashes. E.g. feat/a -> feat-a + echo "RELEASE_NAME=${GITHUB_REF_NAME//\//-}" >> $GITHUB_ENV + + # Deploy + - name: Create Github Deployment + uses: bobheadxi/deployments@v1 + id: deployment + if: ${{ !github.event.pull_request.head.repo.fork }} + with: + step: start + token: ${{ secrets.GITHUB_TOKEN }} + env: ${{ env.RELEASE_NAME }} + ref: ${{ github.head_ref }} + logs: "https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}" diff --git a/.gitignore b/.gitignore index 2165b75..bed7bba 100644 --- a/.gitignore +++ b/.gitignore @@ -127,5 +127,5 @@ dmypy.json .vscode/settings.json tmp.py -# Added by Sam Edwardes -site +# Great Docs build output (ephemeral) +great-docs/ diff --git a/CLAUDE.md b/CLAUDE.md index 0f4e673..73ed311 100644 --- a/CLAUDE.md +++ b/CLAUDE.md @@ -38,14 +38,23 @@ just lint ### Documentation +The docs site is built with [Great Docs](https://posit-dev.github.io/great-docs/) +(a Quarto-based generator). Great Docs requires Python 3.11+ and the Quarto CLI, and +is run via `uvx` so it stays separate from the package's own dependencies. Content lives +in `great-docs.yml`, the `user_guide/` directory, and the package docstrings. The +landing page is generated automatically from `README.md`. + ```bash -# Preview docs locally +# Preview docs locally (http://localhost:3000) just preview-docs -# Publish docs to GitHub Pages -just publish-docs +# Build the static site into great-docs/_site +just build-docs ``` +Docs are published to GitHub Pages automatically by the `CI Docs` workflow +(`.github/workflows/docs.yml`) on every push to `main` — there is no manual publish step. + ### Building and Publishing ```bash diff --git a/docs/assets/images/user-astronaut-solid.svg b/assets/user-astronaut-solid.svg similarity index 100% rename from docs/assets/images/user-astronaut-solid.svg rename to assets/user-astronaut-solid.svg diff --git a/docs/api/spacypdfreader.parsers.md b/docs/api/spacypdfreader.parsers.md deleted file mode 100644 index e866a66..0000000 --- a/docs/api/spacypdfreader.parsers.md +++ /dev/null @@ -1,5 +0,0 @@ -# spacypdfreader.parsers - -::: spacypdfreader.parsers.pdfminer - -::: spacypdfreader.parsers.pytesseract \ No newline at end of file diff --git a/docs/api/spacypdfreader.spacypdfreader.md b/docs/api/spacypdfreader.spacypdfreader.md deleted file mode 100644 index 464715d..0000000 --- a/docs/api/spacypdfreader.spacypdfreader.md +++ /dev/null @@ -1,3 +0,0 @@ -# spacypdfreader.spacypdfreader - -::: spacypdfreader.spacypdfreader \ No newline at end of file diff --git a/docs/contributing.md b/docs/contributing.md deleted file mode 100644 index e82b170..0000000 --- a/docs/contributing.md +++ /dev/null @@ -1,55 +0,0 @@ -# Contributing - -## Deployment checklist - -Before merging changes into main the following must be completed: - -- [ ] Bump the version number in _pyproject.toml_ and _spacypdfreader.**init**.py_ -- [ ] Format the code: `just format` -- [ ] Lint: `just lint` -- [ ] Run pytest: - - ```bash - just test-matrix - just test-docs - ``` - -- Test publishing to test PyPI: `just publish-test` -- [ ] Check the docs locally: `just preview-docs` - -After merging the pull request: - -- [ ] Create a new release on GitHub -- [ ] Publish latest docs to GitHub pages: `just publish-docs` -- [ ] Publish latest package to PyPi: `just publish` - -## Code style - -The ruff code formatter should be run against all code. - -```bash -just format -``` - -## Documentation - -Documentation is built using [Material for mkdocs](https://squidfunk.github.io/mkdocs-material/). All of the documentations lives within the `docs/` directory. - -### Test the docs locally - -To test the docs locally run the following command: - -```bash -just preview-docs -``` - -### Publish the docs - -The docs are hosted on using GitHub pages at [https://samedwardes.github.io/spaCyPDFreader/contributing/](https://samedwardes.github.io/spaCyPDFreader/contributing/). - -Run the following to update the docs: - -```bash -just publish-docs -``` - diff --git a/docs/hooks.py b/docs/hooks.py deleted file mode 100644 index 5789cf0..0000000 --- a/docs/hooks.py +++ /dev/null @@ -1,5 +0,0 @@ -import shutil - - -def copy_readme(*args, **kwargs): - shutil.copy("README.md", "docs/index.md") diff --git a/docs/index.md b/docs/index.md deleted file mode 100644 index 6601cbc..0000000 --- a/docs/index.md +++ /dev/null @@ -1,3 +0,0 @@ -{% - include-markdown "../README.md" -%} \ No newline at end of file diff --git a/great-docs.yml b/great-docs.yml new file mode 100644 index 0000000..9e74b0c --- /dev/null +++ b/great-docs.yml @@ -0,0 +1,73 @@ +# Great Docs Configuration +# See https://posit-dev.github.io/great-docs/user-guide/configuration.html + +# Display Name +# ------------ +display_name: spacypdfreader + +# Docstring Parser +# ---------------- +# The docstring format used in your package (numpy, google, or sphinx) +parser: google + +# Dynamic Introspection +# --------------------- +# Use runtime introspection for more accurate documentation (default: true) +dynamic: true + +# Logo & Favicon +# -------------- +logo: assets/user-astronaut-solid.svg + +# GitHub Integration +# ------------------ +# GitHub link style: "widget" (shows stars count) or "icon" (simple icon) +github_style: widget + +# Site URL +# -------- +# Canonical address of the deployed documentation site. +site_url: "https://samedwardes.github.io/spacypdfreader/" + +# Author Information +# ------------------ +authors: + - name: Sam Edwardes + role: Maintainer + email: edwardes.s@gmail.com + github: SamEdwardes + homepage: https://www.linkedin.com/in/samedwardes + +# User Guide +# ---------- +# Section ordering for the User Guide .qmd files in user_guide/. +user_guide: + - section: "Guides" + contents: + - parsers.qmd + - multiprocessing.qmd + - spacy-extensions.qmd + - section: "Project" + contents: + - changelog.qmd + - contributing.qmd + +# Jupyter Kernel +# -------------- +jupyter: python3 + +# API Reference Structure +# ----------------------- +reference: + - title: Functions + desc: The main entry point for converting a PDF into a spaCy Doc. + contents: + - spacypdfreader.pdf_reader + + - title: Parsers + desc: >- + Built-in PDF-to-text parsers. Pass one of these to the `pdf_parser` + argument of `pdf_reader`, or bring your own. + contents: + - parsers.pdfminer.parser + - parsers.pytesseract.parser diff --git a/justfile b/justfile index 37a3030..2368920 100644 --- a/justfile +++ b/justfile @@ -47,15 +47,18 @@ test-matrix: test-gha: gh workflow run pytest.yml --ref $(git branch --show-current) +# great-docs requires Python 3.11+ and is run via uvx, separate from the +# package's own dependencies (which support Python 3.9+). The pytesseract +# extras are included so the API reference can introspect every parser module. +docs_cmd := "uvx --python 3.12 --with-editable . --with pdf2image --with pillow --with pytesseract --with great-docs great-docs" + [group('docs')] preview-docs: - uv run mkdocs serve + {{docs_cmd}} preview [group('docs')] -publish-docs: - rm -rf site - uv run mkdocs build - uv run mkdocs gh-deploy +build-docs: + {{docs_cmd}} build [group('docs')] test-docs: diff --git a/mkdocs.yml b/mkdocs.yml deleted file mode 100644 index ac4a68c..0000000 --- a/mkdocs.yml +++ /dev/null @@ -1,77 +0,0 @@ -site_name: spacypdfreader -site_description: PDF to spaCy text extraction. -repo_url: https://github.com/samedwardes/spacypdfreader -repo_name: 'samedwardes/spacypdfreader' -edit_uri: '' - -theme: - name: material - icon: - logo: fontawesome/solid/user-astronaut - favicon: assets/images/user-astronaut-solid.svg - features: - - search.suggest - - search.highlight - - content.code.annotate - palette: - - scheme: default - primary: indigo - accent: indigo - toggle: - icon: material/toggle-switch - name: Switch to dark mode - - scheme: slate - primary: red - accent: red - toggle: - icon: material/toggle-switch-off-outline - name: Switch to light mode - -markdown_extensions: - - admonition - - pymdownx.highlight: - anchor_linenums: true - - pymdownx.inlinehilite - - pymdownx.snippets - - pymdownx.superfences - - pymdownx.details - - pymdownx.tasklist: - custom_checkbox: true - clickable_checkbox: true - -plugins: - - search - - include-markdown - - mkdocstrings: - watch: - - spacypdfreader - handlers: - python: - selection: - filters: - - "!^_" # exlude all members starting with _ - - "^__init__$" # but always include __init__ modules and methods - rendering: - show_category_heading: false - show_root_heading: true - show_signature_annotations: true - -extra: - social: - - icon: fontawesome/brands/github-alt - link: https://github.com/samedwardes/spacypdfreader - - icon: fontawesome/brands/twitter - link: https://twitter.com/therealsamlam - - icon: fontawesome/brands/linkedin - link: https://www.linkedin.com/in/samedwardes - -nav: - - Home: 'index.md' - - parsers.md - - multiprocessing.md - - changelog.md - - contributing.md - - API reference: - - api/spacy-extensions.md - - api/spacypdfreader.spacypdfreader.md - - api/spacypdfreader.parsers.md \ No newline at end of file diff --git a/pyproject.toml b/pyproject.toml index 30b4743..5fc03e3 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,7 +27,7 @@ Homepage = "https://samedwardes.github.io/spacypdfreader" Documentation = "https://samedwardes.github.io/spacypdfreader" Repository = "https://github.com/SamEdwardes/spaCyPDFreader.git" Issues = "https://github.com/SamEdwardes/spaCyPDFreader/issues" -Changelog = "https://github.com/SamEdwardes/spacypdfreader/blob/main/docs/changelog.md" +Changelog = "https://samedwardes.github.io/spacypdfreader/user-guide/changelog.html" [project.optional-dependencies] pytesseract = ["pdf2image>=1.17.0", "pillow>=10.4.0", "pytesseract>=0.3.13"] @@ -42,11 +42,6 @@ en-core-web-sm = { url = "https://github.com/explosion/spacy-models/releases/dow [dependency-groups] dev = [ - "mkdocs>=1.6.1", - "mkdocs-include-markdown-plugin>=6.2.2", - "mkdocs-material>=9.5.39", "pytest>=8.3.3", "en-core-web-sm", - "mkdocstrings>=0.26.1", - "mkdocstrings-python>=1.11.1", ] diff --git a/docs/changelog.md b/user_guide/changelog.qmd similarity index 99% rename from docs/changelog.md rename to user_guide/changelog.qmd index 768f804..2595b90 100644 --- a/docs/changelog.md +++ b/user_guide/changelog.qmd @@ -1,4 +1,6 @@ -# Changelog +--- +title: Changelog +--- ## 0.4.0 (2025-10-30) diff --git a/user_guide/contributing.qmd b/user_guide/contributing.qmd new file mode 100644 index 0000000..ed16c65 --- /dev/null +++ b/user_guide/contributing.qmd @@ -0,0 +1,63 @@ +--- +title: Contributing +--- + +## Deployment checklist + +Before merging changes into main the following must be completed: + +- [ ] Bump the version number in _pyproject.toml_ and _spacypdfreader.\_\_init\_\__.py_ +- [ ] Format the code: `just format` +- [ ] Lint: `just lint` +- [ ] Run pytest: + + ```bash + just test-matrix + just test-docs + ``` + +- Test publishing to test PyPI: `just publish-test` +- [ ] Check the docs locally: `just preview-docs` + +After merging the pull request: + +- [ ] Create a new release on GitHub +- [ ] Publish latest package to PyPi: `just publish` + +The documentation is published automatically to GitHub Pages by the +`CI Docs` GitHub Actions workflow on every push to `main`, so no manual +docs deployment step is required. + +## Code style + +The ruff code formatter should be run against all code. + +```bash +just format +``` + +## Documentation + +Documentation is built using [Great Docs](https://posit-dev.github.io/great-docs/), +a Quarto-based documentation generator for Python packages. All of the +documentation content lives in `great-docs.yml`, the `user_guide/` directory, +and the docstrings within the package source code. + +Building the docs requires [Quarto](https://quarto.org/docs/get-started/) to be +installed locally. Great Docs itself is run through `uvx`, so it does not need +to be added to the project dependencies. + +### Test the docs locally + +To preview the docs locally run the following command: + +```bash +just preview-docs +``` + +### Publish the docs + +The docs are hosted using GitHub Pages at +[https://samedwardes.github.io/spacypdfreader/](https://samedwardes.github.io/spacypdfreader/). +They are rebuilt and published automatically by the `CI Docs` workflow +(`.github/workflows/docs.yml`) on every push to the `main` branch. diff --git a/docs/multiprocessing.md b/user_guide/multiprocessing.qmd similarity index 97% rename from docs/multiprocessing.md rename to user_guide/multiprocessing.qmd index 02aa019..dd83004 100644 --- a/docs/multiprocessing.md +++ b/user_guide/multiprocessing.qmd @@ -1,4 +1,6 @@ -# Multiprocessing +--- +title: Multiprocessing +--- As of version `0.3.0` spacypdfreader has built in support for multi-processing. This can dramatically improve the time it takes to convert a PDF to text. @@ -6,7 +8,7 @@ As of version `0.3.0` spacypdfreader has built in support for multi-processing. You can use multiprocessing with an parser. -**pdfminder** +**pdfminer** ```python import spacy @@ -71,4 +73,3 @@ bench(None) bench(8) # Took 9.051591 seconds to complete ``` - diff --git a/docs/parsers.md b/user_guide/parsers.qmd similarity index 77% rename from docs/parsers.md rename to user_guide/parsers.qmd index a6f4868..f4b6863 100644 --- a/docs/parsers.md +++ b/user_guide/parsers.qmd @@ -1,4 +1,6 @@ -# Parsers +--- +title: Parsers +--- Extracting text from PDF documents can be challenging. There are several different options in the python ecosystem. *spacypdfreader* makes it easy to extract text from PDF documents. At this time *spacypdfreader* has built in support for two options: @@ -7,13 +9,13 @@ Extracting text from PDF documents can be challenging. There are several differe You can also bring your own custom PDF to text parser to use in *spacypdfreader*. -!!! tip +::: {.callout-tip} +💁‍♂️ Would you like to see another parser added? Please submit an issue on [GitHub](https://github.com/SamEdwardes/spaCyPDFreader/issues/new/choose) and the maintainer will look into adding support. +::: - 💁‍♂️ Would you like to see another parser added? Please submit an issue on [GitHub](https://github.com/SamEdwardes/spaCyPDFreader/issues/new/choose) and the maintainer will look into adding support. - -!!! tip - - Parsing big PDFs can be slow. For example, parsing a 166 page PDF document on an M1 mac took 166 seconds. If you are working with larger documents try breaking them into smaller documents and use multiprocessing. +::: {.callout-tip} +Parsing big PDFs can be slow. For example, parsing a 166 page PDF document on an M1 mac took 166 seconds. If you are working with larger documents try breaking them into smaller documents and use multiprocessing. +::: ## Comparison of built in parsers @@ -31,7 +33,7 @@ All PDF to text parsers have their tradeoffs. The table below summaries the pros A pure Python library for extracting text from PDFs. -**Installation** +**Installation** No action required, *pdfminer* will automatically be installed when you install *spacypdfreader*. @@ -48,17 +50,17 @@ nlp = spacy.load("en_core_web_sm") doc = pdf_reader("tests/data/test_pdf_01.pdf", nlp) ``` -You could also be more verbose and pass in additional parameters. For a list of available parameters please refer to the pdfminer documentation for the [`extract_function`](https://pdfminersix.readthedocs.io/en/latest/reference/highlevel.html#extract-text) function. +You could also be more verbose and pass in additional parameters. For a list of available parameters please refer to the pdfminer documentation for the [`extract_text`](https://pdfminersix.readthedocs.io/en/latest/reference/highlevel.html#extract-text) function. ```python import spacy from spacypdfreader import pdf_reader -from spacypdfreader.parsers.pdfminer import PdfminerParser +from spacypdfreader.parsers.pdfminer import parser nlp = spacy.load("en_core_web_sm") params = {"caching": False} -doc = pdf_reader("tests/data/test_pdf_01.pdf", nlp, PdfminerParser, **params) +doc = pdf_reader("tests/data/test_pdf_01.pdf", nlp, parser, **params) ``` ## *pytesseract* @@ -83,18 +85,18 @@ To use *pytesseract* you must pass the *pytesseract* parser into the `pdf_parser import spacy from spacypdfreader import pdf_reader -from spacypdfreader.parsers.pytesseract import PytesseractParser +from spacypdfreader.parsers.pytesseract import parser nlp = spacy.load("en_core_web_sm") -doc = pdf_reader("tests/data/test_pdf_01.pdf", nlp, PytesseractParser) +doc = pdf_reader("tests/data/test_pdf_01.pdf", nlp, parser) ``` ## Bring your own parser *spacypdfreader* allows your to bring your custom PDF parser. For examples of how to implement your own parser refer to: -- , or -- . +- , or +- . To work with spacypdfreader a parser must be a function that: @@ -102,5 +104,6 @@ To work with spacypdfreader a parser must be a function that: - Has an argument named `page_number`. This argument should use *1 based indexing*. E.g. the value 1 refers to the first page of the PDF. - The function should return the text only for a single page of the PDF. This allows spacypdfreader to execute faster with multi-processing. -!!! warning - Version `0.3.0` changed how parsers are implemented. If you have created a custom parser that works with an older version of spacypdfreader it will need to be reimplemented. \ No newline at end of file +::: {.callout-warning} +Version `0.3.0` changed how parsers are implemented. If you have created a custom parser that works with an older version of spacypdfreader it will need to be reimplemented. +::: diff --git a/docs/api/spacy-extensions.md b/user_guide/spacy-extensions.qmd similarity index 87% rename from docs/api/spacy-extensions.md rename to user_guide/spacy-extensions.qmd index 1f41924..7cd61d1 100644 --- a/docs/api/spacy-extensions.md +++ b/user_guide/spacy-extensions.qmd @@ -1,8 +1,10 @@ -# spaCy custom extensions +--- +title: spaCy custom extensions +--- -When using [spacypdfreader.spacypdfreader.pdf_reader][] custom attributes and methods are added to spacy objects. +When using [`pdf_reader`](../reference/spacypdfreader.pdf_reader.qmd) custom attributes and methods are added to spacy objects. -## `spacy.Doc` +## `spacy.Doc` ### Extension attributes @@ -36,4 +38,4 @@ When using [spacypdfreader.spacypdfreader.pdf_reader][] custom attributes and me | Extension | Type | Description | | ------ | ------ | ------ | -| `token._.page_number` | `int` | The PDF page number in which the token was extracted from. The first page is `1`. | \ No newline at end of file +| `token._.page_number` | `int` | The PDF page number in which the token was extracted from. 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The pytesseract -# extras are included so the API reference can introspect every parser module. -docs_cmd := "uvx --python 3.12 --with-editable . --with pdf2image --with pillow --with pytesseract --with great-docs great-docs" - +# great-docs requires Python 3.11+. The pytesseract extras are included so the +# API reference can introspect every parser module. 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.github/workflows/docs.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml index eb3f180..e0045d3 100644 --- a/.github/workflows/docs.yml +++ b/.github/workflows/docs.yml @@ -23,7 +23,6 @@ jobs: run: | python -m pip install uv uv sync --all-extras - uv pip install great-docs - name: Set up Quarto uses: quarto-dev/quarto-actions/setup@v2 From 050545a141abdac2814842d888a668ac53b95f7a Mon Sep 17 00:00:00 2001 From: SamEdwardes Date: Fri, 26 Jun 2026 14:38:00 -0700 Subject: [PATCH 5/6] Add prek for pre-commit hooks Configure prek (pre-commit reimplementation) via prek.toml with ruff, rumdl, and basic file-check hooks. Add prek to the dev dependency group and document hook setup in the contributing guide and CLAUDE.md. --- CLAUDE.md | 31 +++++++++++++++++++++++-------- prek.toml | 26 ++++++++++++++++++++++++++ pyproject.toml | 1 + user_guide/contributing.qmd | 24 +++++++++++++++++++++++- uv.lock | 26 ++++++++++++++++++++++++++ 5 files changed, 99 insertions(+), 9 deletions(-) create mode 100644 prek.toml diff --git a/CLAUDE.md b/CLAUDE.md index 73ed311..14657f6 100644 --- a/CLAUDE.md +++ b/CLAUDE.md @@ -36,6 +36,21 @@ just format just lint ``` +### Pre-commit hooks + +Git pre-commit hooks are managed with [prek](https://github.com/j178/prek), a +drop-in replacement for `pre-commit`. Configuration lives in `prek.toml`. prek is +part of the `dev` dependency group. Install the hooks once, then run them on +demand as needed: + +```bash +# Install the Git hooks (one time after cloning) +uv run prek install + +# Run all hooks against every file +uv run prek run --all-files +``` + ### Documentation The docs site is built with [Great Docs](https://posit-dev.github.io/great-docs/) @@ -73,22 +88,22 @@ just publish ### Core Components - **`spacypdfreader.spacypdfreader.pdf_reader()`**: Main entry point function that converts a PDF to a spaCy `Doc` object - - Takes a PDF path and a spaCy `Language` object - - Returns a `Doc` object with custom extensions - - Supports multiprocessing via `n_processes` parameter - - Supports page range extraction via `page_range` parameter + - Takes a PDF path and a spaCy `Language` object + - Returns a `Doc` object with custom extensions + - Supports multiprocessing via `n_processes` parameter + - Supports page range extraction via `page_range` parameter ### Parser System The library uses a pluggable parser architecture in `spacypdfreader/parsers/`: - **pdfminer** (`parsers/pdfminer.py`): Default parser, fast but lower accuracy - - Uses `pdfminer.high_level.extract_text()` - - Zero-indexed internally but converts from 1-indexed API + - Uses `pdfminer.high_level.extract_text()` + - Zero-indexed internally but converts from 1-indexed API - **pytesseract** (`parsers/pytesseract.py`): OCR-based parser, slower but higher accuracy - - Converts PDF pages to images first - - Requires optional dependencies: `pip install 'spacypdfreader[pytesseract]'` + - Converts PDF pages to images first + - Requires optional dependencies: `pip install 'spacypdfreader[pytesseract]'` Each parser implements a `parser(pdf_path: str, page_number: int, **kwargs)` function that returns text for a single page. diff --git a/prek.toml b/prek.toml new file mode 100644 index 0000000..70e1712 --- /dev/null +++ b/prek.toml @@ -0,0 +1,26 @@ +[[repos]] +repo = "builtin" +hooks = [ + { id = "trailing-whitespace" }, + { id = "end-of-file-fixer" }, + { id = "check-yaml" }, + { id = "check-toml" }, + { id = "check-added-large-files" }, +] + +[[repos]] +repo = "https://github.com/astral-sh/ruff-pre-commit" +rev = "v0.15.6" +hooks = [ + { id = "ruff-check", args = [ + "--fix", + "--select", + "I,F401", + ] }, + { id = "ruff-format" }, +] + +[[repos]] +repo = "https://github.com/rvben/rumdl-pre-commit" +rev = "v0.0.222" +hooks = [{ id = "rumdl-fmt", args = ["--disable=MD013"] }] diff --git a/pyproject.toml b/pyproject.toml index 60c910c..a470b32 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -45,4 +45,5 @@ dev = [ "pytest>=8.3.3", "en-core-web-sm", "great-docs>=0.14.1; python_version >= '3.11'", + "prek>=0.4.5", ] diff --git a/user_guide/contributing.qmd b/user_guide/contributing.qmd index ed16c65..973275c 100644 --- a/user_guide/contributing.qmd +++ b/user_guide/contributing.qmd @@ -16,7 +16,7 @@ Before merging changes into main the following must be completed: just test-docs ``` -- Test publishing to test PyPI: `just publish-test` +- [ ] Test publishing to test PyPI: `just publish-test` - [ ] Check the docs locally: `just preview-docs` After merging the pull request: @@ -36,6 +36,28 @@ The ruff code formatter should be run against all code. just format ``` +## Pre-commit hooks + +This project uses [prek](https://github.com/j178/prek) to manage Git +pre-commit hooks. prek is a drop-in replacement for `pre-commit` and reads +its configuration from `prek.toml`. The hooks run ruff (import sorting, +linting, and formatting), rumdl (Markdown formatting), and a set of basic +file checks. + +prek is included in the `dev` dependency group, so no separate install is +required. Enable the hooks once after cloning the repository: + +```bash +uv run prek install +``` + +The hooks then run automatically on every `git commit`. 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From: SamEdwardes Date: Fri, 26 Jun 2026 15:11:07 -0700 Subject: [PATCH 6/6] Run prek run -a --- .github/workflows/pytest.yml | 1 - README.md | 2 +- assets/user-astronaut-solid.svg | 2 +- notebooks/spacypdfreader-demo.ipynb | 1 - prek.toml | 2 +- rumdl.toml | 12 ++++++++++++ 6 files changed, 15 insertions(+), 5 deletions(-) create mode 100644 rumdl.toml diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml index 6879149..3f54917 100644 --- a/.github/workflows/pytest.yml +++ b/.github/workflows/pytest.yml @@ -34,4 +34,3 @@ jobs: - name: Test with pytest run: | uv run --python ${{ matrix.python-version }} --all-extras pytest - diff --git a/README.md b/README.md index 97d6ba0..0bc2323 100644 --- a/README.md +++ b/README.md @@ -112,4 +112,4 @@ nlp = spacy.load("en_core_web_sm") doc = pdf_reader("tests/data/test_pdf_01.pdf", nlp) ``` -Note that the `nlp.add_pipe` is not used by spaCyPDFreader. \ No newline at end of file +Note that the `nlp.add_pipe` is not used by spaCyPDFreader. diff --git a/assets/user-astronaut-solid.svg b/assets/user-astronaut-solid.svg index ee7cc34..a73c35c 100644 --- a/assets/user-astronaut-solid.svg +++ b/assets/user-astronaut-solid.svg @@ -1 +1 @@ - \ No newline at end of file + diff --git a/notebooks/spacypdfreader-demo.ipynb b/notebooks/spacypdfreader-demo.ipynb index 11074b6..a172c6f 100644 --- a/notebooks/spacypdfreader-demo.ipynb +++ b/notebooks/spacypdfreader-demo.ipynb @@ -10,7 +10,6 @@ "import spacy\n", "\n", "from spacypdfreader import pdf_reader\n", - "from spacypdfreader.parsers.pdfminer import PdfminerParser\n", "from spacypdfreader.parsers.pytesseract import PytesseractParser" ] }, diff --git a/prek.toml b/prek.toml index 70e1712..ceb5061 100644 --- a/prek.toml +++ b/prek.toml @@ -23,4 +23,4 @@ hooks = [ [[repos]] repo = "https://github.com/rvben/rumdl-pre-commit" rev = "v0.0.222" -hooks = [{ id = "rumdl-fmt", args = ["--disable=MD013"] }] +hooks = [{ id = "rumdl-fmt", args = [] }] diff --git a/rumdl.toml b/rumdl.toml new file mode 100644 index 0000000..58244d4 --- /dev/null +++ b/rumdl.toml @@ -0,0 +1,12 @@ +[global] +line-length = 100 +disable = [ + "MD013", # Keep lines short for better readability + "MD041", # Show command output in documentation + "MD036", # No emphasis as heading + "MD033", # Inline html +] + +# Keep list indentation consistent +[MD007] +indent = 4