Skip to content

Latest commit

 

History

History
38 lines (20 loc) · 2.01 KB

README.md

File metadata and controls

38 lines (20 loc) · 2.01 KB

AD_Spatial_Transcriptome


"Uncovering plaque-glia niches in human Alzheimer’s disease brains using spatial transcriptomics" (Molecular Neurodegeneration Advances, 2025)

| Denis R. Avey, Bernard Ng, Ricardo A. Vialle, Nicola A. Kearns, Katia de Paiva Lopes, Artemis Iatrou, Sashini De Tissera, Himanshu Vyas, Devin M. Saunders, Daniel J. Flood, Jishu Xu, Shinya Tasaki, Chris Gaiteri, David A. Bennett, Yanling Wang


Table of Contents

Note: more details are available within sub-directories documentation

Subdirectory Description
analysis/ Code used in manuscript analysis

Main scripts and functions

Pseudo-bulk matrices

Seurat ST clustering

BayesSpace ST clustering

cell2location pipeline

LMM plaque Glia niche analysis

Niches A-beta

Niches glia


Distributed under terms of the GNU GENERAL PUBLIC LICENSE.