Hello, when I follow the tutorial to analyse the outcomes of spaceranger, Python3 reported an error: ValueError: b'svddc failed in l2fit.'
The error won't exist when didn't add the flavor="seurat_v3", but the program doesn't work properly.
The code I tried is:
sc.pp.highly_variable_genes(adata, flavor="seurat_v3", n_top_genes=1000)
the data:
adata
AnnData object with n_obs × n_vars = 2393 × 17943
obs: 'in_tissue', 'array_row', 'array_col'
var: 'gene_ids', 'feature_types', 'genome'
uns: 'spatial'
obsm: 'spatial'
Hello, when I follow the tutorial to analyse the outcomes of spaceranger, Python3 reported an error: ValueError: b'svddc failed in l2fit.'
The error won't exist when didn't add the flavor="seurat_v3", but the program doesn't work properly.
The code I tried is: