diff --git a/.gitignore b/.gitignore index 67d42ca33..4533bf140 100644 --- a/.gitignore +++ b/.gitignore @@ -66,3 +66,6 @@ slurm_parallel_runs/ # documentation files docs/build/* + +# uv stuff +ReEDS.egg-info/ diff --git a/.python-version b/.python-version new file mode 100644 index 000000000..2c0733315 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.11 diff --git a/AGENTS.md b/AGENTS.md new file mode 100644 index 000000000..29a2f86fc --- /dev/null +++ b/AGENTS.md @@ -0,0 +1,319 @@ +# ReEDS Agent Guide + +ReEDS is a capacity planning and dispatch model for the U.S. electricity system. +The repository is a mixed Python, GAMS, and Julia codebase: Python prepares inputs, +orchestrates runs, and postprocesses outputs; GAMS contains the optimization model; +Julia translates solved ReEDS systems into PRAS resource adequacy systems. + +This repo was restructured upstream so that most Python and GAMS source now lives +inside the `reeds/` package (the old flat repo-root layout is gone). The main +orchestrator is `runreeds.py` (formerly `runbatch.py`). + +Use this file as the first stop for agent orientation. Deeper references: + +- @README.md: repository overview, installation entry points, and basic run + instructions. +- @docs/source/setup.md: user-facing setup, dependency, and environment + instructions. +- @docs/source/user_guide.md: scenario configuration, run options, switches, + outputs, and common workflows. +- @docs/source/developer_best_practices.md: coding conventions, testing + expectations, and GAMS development guidance. +- @sources_documentation.md: data-source documentation expectations and input + provenance notes. + +## Project Structure + +- `runreeds.py`: main run orchestrator (repo root). Reads `cases*.csv`, creates + `runs/{BatchName}_{case}/`, writes per-case run scripts, copies needed + code/data into the case folder, and launches local or HPC (SLURM) runs. +- `cases.csv`: canonical case/switch catalog, with descriptions, allowed values, + and defaults. Scenario files such as `cases_test.csv`, `cases_small.csv`, + `cases_cepm.csv`, and study-specific `cases_{suffix}.csv` override defaults by + case column. +- `reeds/`: the main Python package. Top-level modules include `reeds.io`, + `reeds.inputs`, `reeds.spatial`, `reeds.techs`, `reeds.log`, `reeds.checks`, + `reeds.financials`, `reeds.results`, `reeds.timeseries`, `reeds.units`, + `reeds.remote`, and plotting modules (`reeds.plots`, `reeds.reedsplots`, + `reeds.prasplots`). +- `reeds/core/`: the GAMS model and its solve orchestration, grouped by stage: + - `reeds/core/setup/`: model assembly. `a_createmodel.gms` is the top-level + assembler and `$include`s, in order, `b_inputs.gms` (GAMS-readable inputs) → + `c_model.gms` (variables/equations) → `d_objective.gms` (objective) → + `d_mga.gms` → `e_solveprep.gms`. + - `reeds/core/solve/`: solve drivers. `solve.py` is the Python solve wrapper; + `3_solve_oneyear.gms`, `3_solve_allyears.gms`, and `3_solve_window.gms` + correspond to `timetype` `seq`, `int`, and `win`. Also `1_tc_phaseout.py`, + `2_financials.gms`, `2_temporal_params.gms`, `4_post_solve_adjustments.gms`, + `5_varfix.gms`, `6_data_dump.gms`. + - `reeds/core/solve_pcm/`: production-cost-model solve (`solve_pcm.gms`, + `unfix_op.gms`). + - `reeds/core/terminus/`: reporting. `report.gms` is the main report, + `report_dump.py` dumps report parameters, `report_params.csv` lists the + reported parameters, plus `dump_alldata.gms`, `powfrac_calc.gms`, + `get_last_iter.py`. +- `reeds/input_processing/`: scripts run during case setup to create files under + `runs/{case}/inputs_case/`. `copy_files.py` is the broad data copier/filter; + scripts such as `recf.py`, `hourly_repperiods.py`, `hourly_load.py`, + `writecapdat.py`, `plantcostprep.py`, `transmission.py`, and `check_inputs.py` + derive key inputs. `runfiles.csv` (the input-file inventory: how each file is + copied, filtered, aggregated, or transformed into `inputs_case/`) lives here. +- `reeds/resource_adequacy/`: capacity credit, PRAS, and stress-period logic that + runs between solve years when enabled. `ra_calcs.py` (formerly `Augur.py`) is + the entry point; also `capacity_credit.py`, `stress_periods.py`, `prep_data.py`, + `diagnostic_plots.py`, `run_pras.jl`, and `ra_switches.csv`. The Julia + translation package lives at `reeds/resource_adequacy/reeds2pras/`. +- `reeds/hpc/`: HPC helpers (`aws_setup.sh`, `srun_template.sh`). +- `reeds/solver/`: solver option files (`cplex.opt`, `cplex.op2`, `cbc.opt`, + `gurobi.opt`). +- `hourlize/`: preprocessing for resource and load profiles. Main wrapper is + `hourlize/run_hourlize.py`; `hourlize/reeds_to_rev.py` disaggregates ReEDS + investments back to reV supply curve sites. +- `postprocessing/`: reports, diagnostics, plots, run comparison, retail rates, + reValue, bokehpivot, Tableau, air-quality, land-use, R2X (`run_r2x.py`), and + output cleanup. +- `preprocessing/`: tools for preparing repository inputs before ReEDS runs. +- `helpers/`: operational helpers — `runstatus.py`, `restart_runs.py`, + `interim_report.py`, `interim_report_batch.py`. +- `inputs/`: checked-in model inputs plus pointers to large remote inputs. + `inputs/remote_files.csv` catalogs remote data; large files are normally + downloaded into `inputs/remote/` and linked or copied as needed. +- `runs/`: generated run folders. Treat contents as user/generated artifacts and + do not edit or delete them unless the task explicitly targets a run. +- `tests/` and `hourlize/tests/`: pytest tests. Some tests are lightweight unit + tests; `tests/test_outputs.py` requires a completed ReEDS case. +- `.github/workflows/`: CI, docs, and workflow-quality automation. +- `CEPM/`: RMI/CEPM-specific docs kept separate from upstream docs — + `UV_MAMBA_GUIDE.md` (uv/mamba dependency mapping) and `internal-ci-testing.md` + (on-prem CI runbook). The CEPM setup-and-run helper is `run_cepm.ps1` at repo root. + +## Environment + +- Python is pinned to `3.11` via `.python-version` and `pyproject.toml`. +- Python dependencies are managed with `uv` and locked in `uv.lock`. + `environment.yml` is kept as an upstream-compatible conda/mamba fallback; see + @CEPM/UV_MAMBA_GUIDE.md for keeping the two in sync. +- Julia `1.12.1` is the tested version for ReEDS2PRAS and stress-period flows. +- GAMS is required for model solves. CPLEX is the normal solver; small cases may + work with other solvers, but CPLEX-oriented settings are the maintained path. +- Several large inputs are remote. `reeds/remote.py` downloads them based on + `inputs/remote_files.csv`; network access may be needed. +- ReEDS still expects Conda-style environment variables even when using `uv`. + +PowerShell setup used by local agents on Windows: + +```powershell +uv sync --extra dev +julia --project=. instantiate.jl +$env:CONDA_DEFAULT_ENV = "reeds2" +$env:CONDA_PREFIX = (Resolve-Path .venv).Path +``` + +Optional remote data preload: + +```powershell +uv run python reeds/remote.py +``` + +## Build And Run Commands + +- Show runreeds options: `uv run python runreeds.py -h` +- Interactive run setup: `uv run python runreeds.py` +- Typical test batch: `uv run python runreeds.py -b vYYYYMMDD_label -c test` +- One or more named cases from a cases file: + `uv run python runreeds.py -b vYYYYMMDD_label -c test -s caseA,caseB` +- Dry run case setup without launch: `uv run python runreeds.py -b label -c test -t` +- Check run status: `uv run python helpers/runstatus.py ` +- Restart failed HPC runs: `uv run python helpers/restart_runs.py ` +- Run a completed-case output check: + `uv run python -m pytest tests/test_outputs.py --casepath runs/` +- Build docs when docs dependencies are installed: + `uv run sphinx-build docs/source docs/build/` + +`runreeds.py` command-line arguments (from its argparse): `-b/--BatchName`, +`-c/--cases_suffix`, `-s/--single` (a single case or comma-delimited list), +`-r/--simult_runs`, `-l/--forcelocal`, `-f/--skip_checks`, `-d/--debug`, +`-n/--debugnode`, `-p/--cases_per_node`, `-t/--dryrun`. + +Be conservative with full model runs. They can be long, need licensed GAMS, may +download large files, and write substantial data under `runs/`. + +## Testing + +- Lightweight Python IO tests: + `uv run python -m pytest tests/test_read_h5_files.py` +- Hourlize tests: + `uv run python -m pytest hourlize/tests` +- Completed-run output validation: + `uv run python -m pytest tests/test_outputs.py --casepath runs/` +- Julia ReEDS2PRAS tests from `reeds/resource_adequacy/reeds2pras/test/`: + `julia --project runtests.jl` +- CI runs a test ReEDS scenario with `python runreeds.py -b "$batch" -c test -s "$SCENARIO"` + (scenarios `github_Pacific`, `github_Everything`, `github_MA_county_CC`) and + then validates outputs with `tests/test_outputs.py`. A later CI job exercises + R2X translation via `postprocessing/run_r2x.py`. + +`tests/test_outputs.py` is a completed-case artifact check, not a guarantee that +every bokehpivot report section rendered cleanly. For report health, inspect +`runs//outputs/reeds-report/report.log` and the generated HTML directly. + +When changing GAMS objective-function inputs, check +`tests/objective_function_params.yaml`; it documents parameters that +`reeds/input_processing/check_inputs.py` validates for missing values. + +## Architecture And Run Flow + +1. A cases file is parsed by `reeds.inputs.parse_cases()`. +2. `runreeds.py` expands cases, checks switch consistency, and creates + `runs/{BatchName}_{case}/`. +3. Case setup writes `inputs_case/`, `switches.csv`, `gswitches.csv`, + `modeledyears.csv`, run metadata, and generated shell/batch scripts. +4. `reeds/input_processing/copy_files.py` and related scripts copy, filter, + aggregate, and derive inputs. Many output CSV names intentionally match GAMS + parameter names read by `reeds/core/setup/b_inputs.gms`. +5. GAMS assembles the model via `reeds/core/setup/a_createmodel.gms`, creates + `inputs.gdx`, solves according to the chosen `timetype` (`seq` → + `3_solve_oneyear.gms`, `int` → `3_solve_allyears.gms`, `win` → + `3_solve_window.gms`, all under `reeds/core/solve/`), and writes GDX/CSV + outputs. +6. `reeds/resource_adequacy/ra_calcs.py` may run between solve years to prepare + PRAS data, run Julia PRAS (`run_pras.jl` + `reeds2pras/`), calculate capacity + credit, and add stress periods. +7. `reeds/core/terminus/report.gms`, `report_dump.py`, bokehpivot, retail-rate, + plots, Vizit, R2X, and other postprocessors write to `runs/{case}/outputs/`. + +Useful run-folder files: + +- `gamslog.txt`: first place to inspect failures; search for `ERROR`, + `LP status`, `Status`, and `Cur_year`. +- `lstfiles/`: GAMS listing files. `1_Inputs.lst` catches input build errors; + year-specific `.lst` files catch solve failures. +- `meta.csv`: process timing and repository metadata. +- `inputs_case/`: exact inputs seen by a case. This is usually better than + guessing from repository defaults when debugging a completed run. +- `outputs/`: reported CSVs, figures, bokehpivot reports, retail outputs, etc. +- `handoff/reeds_data/`: resource-adequacy / capacity-credit intermediate data + (GDX and CSV) passed between solve years. + +## Code Style + +Follow the current file's style first. This repository predates some current +guidelines, so nearby conventions matter. + +Python: + +- Prefer PEP 8 for new Python. +- Use `os.path.join()` or `pathlib` rather than hard-coded separators. +- Input-processing scripts should not change working directory; pass explicit + paths such as `reeds_path` and `inputs_case`. +- Keep data transformations in Python when practical instead of adding complex + calculations in GAMS. +- Use `reeds.io` helpers for reading outputs, switches, scalars, HDF5, maps, and + case paths rather than duplicating parsing logic. +- Many scripts log through `reeds.log.makelog()` and append timings with + `reeds.log.toc()`; keep that pattern for run-step scripts. +- Avoid broad formatting-only changes. The repo recommends Ruff linting, but + does not yet enforce repo-wide autoformatting. + +GAMS: + +- Follow `docs/source/developer_best_practices.md`. +- New GAMS files use the category prefix convention, e.g. `d1_...`, + `d2_...`, `e_...`. +- Switches are `GSw_...` in `cases.csv`; numeric GAMS versions usually become + `Sw_...`. Off is `0`, on is `1`. +- Parameters are lowercase with underscores; variables are uppercase; equations + are `eq_...`. +- GAMS declarations should include units first in comments, e.g. `"--MW-- ..."` . +- Prefer blocks of declarations over many one-line declarations. +- Use braces for GAMS functions such as `sum{...}`. +- In equations, terms generally start with `+` or `-`, parameters appear to the + left of variables, and operators have surrounding spaces. +- Monetary values should be rounded to two decimal places; other plain-text + parameters should generally use no more than three significant figures. +- Avoid hard-coded numbers in equations; name them as parameters when possible. + +Inputs and CSVs: + +- Files written to `inputs_case/` should generally share the GAMS parameter name + that reads them. +- GAMS-readable CSV headers often start with `*` so GAMS treats the header as a + comment. +- Raw inputs belong under topical `inputs/` subdirectories. +- Large or optional data should not be committed casually; use the remote-file + mechanism and document sources in `sources.csv` / `sources_documentation.md`. +- Costs read into `reeds/core/setup/b_inputs.gms` should already be in 2004 + dollars unless the surrounding code clearly says otherwise; use `deflator.csv` + rather than hard-coded conversions. + +## Debugging Notes + +- For run failures, start with `runs//gamslog.txt`, then the newest file + in `runs//lstfiles/`. +- For input-processing failures, inspect `inputs_case/`, `1_Inputs.lst`, and + the script call generated in `call_.bat` or `call_.sh`. +- For output/report failures, compare `outputs/`, `report_params.csv`, and + `postprocessing/bokehpivot` report logs. +- When an expected output is missing, first check the effective run switches in + `runs//inputs_case/switches.csv`; repository defaults in `cases.csv` + may have been overridden by `cases_test.csv`, study cases, or the case column. +- Some report gaps are switch-driven and expected. For example, sequential + `timetype=seq` runs do not produce `cap_iter`, and `land_use_analysis=0` skips + `land_use_total.csv`. +- OpRes report failures can come from empty representative reserve periods: + check `inputs_case/rep/opres_periods.csv`, `opRes_supply_h.csv`, `Sw_OpRes`, + and the generated equation counts in `lstfiles/1_Inputs.lst` or solve `.lst` + files before assuming `GSw_OpRes` itself is wrong. +- Current `health_damages_caused_r.csv` files use the air-quality postprocessor + schema (`ba`, `pollutant`, `tons`, `md`, `damage_$`, `mortality`); bokehpivot + normalizes this to legacy report display columns in `postprocessing/bokehpivot/reeds2.py`. +- `helpers/runstatus.py` summarizes running/failed/finished cases for a batch prefix. +- `postprocessing/check_error.py` reads the `error_check` output for solved + cases. +- For GAMS data comparison, developer docs recommend targeted `execute unload` + statements rather than broad dumps. +- Keep `cleanup_level` at `0` while developing or debugging, because higher + cleanup levels remove files useful for restarts and diagnosis. + +## Important Subsystems + +- Remote data: `reeds.remote` reads `inputs/remote_files.csv` and manages + downloads under `inputs/remote/`. +- Monte Carlo sampling: `reeds/input_processing/mcs_sampler.py` plus YAML + distribution files described in the user guide. +- Temporal clustering and hourly data: `reeds/input_processing/hourly_repperiods.py`, + `hourly_writetimeseries.py`, `hourly_load.py`, and `inputs_case/rep/`. +- Renewable capacity factors and resources: `reeds/input_processing/recf.py`, + `writesupplycurves.py`, `hourlize/`, and `inputs_case/recf.h5`. +- Resource adequacy/stress periods: `reeds/resource_adequacy/` (`ra_calcs.py`, + `capacity_credit.py`, `stress_periods.py`, `run_pras.jl`, `reeds2pras/`) and + `GSw_PRM_*` switches. +- Standard reports: `reeds/core/terminus/report.gms`, `report_dump.py`, + `postprocessing/bokehpivot/`, and `postprocessing/single_case_plots.py`. +- Run comparisons: `postprocessing/compare_cases.py`, + `postprocessing/combine_runs/`, and `postprocessing/uncertainty_plots.py`. +- Retail rates: `postprocessing/retail_rate_module/`. +- R2X translation: `postprocessing/run_r2x.py` and CI's `r2x-reeds` invocation. + +## Security And Data Handling + +- Never commit secrets, credentials, GAMS license files, local machine paths that + should remain private, or API tokens. +- Be careful with generated run folders. They may contain large files, local + paths, logs, and intermediate model data. +- Do not delete, move, or overwrite run artifacts unless explicitly asked. +- Ask before downloading large remote inputs or launching long solves. +- Preserve source documentation when adding or changing data: update + `sources.csv`, `sources_documentation.md`, and relevant docs when applicable. + +## Git Workflow For Agents + +- Expect a dirty worktree. Check `git status --short` before edits and preserve + user changes. +- Keep edits scoped to the user's request. Do not reformat unrelated files. +- Prefer small, reviewable changes with targeted tests or validation commands. +- Before claiming a model change is safe, state what was and was not run. A + Python unit test is not a substitute for a GAMS solve when model behavior is + changed. +- Do not use destructive git commands or delete generated data unless the user + asks for that specific action. diff --git a/CEPM/UV_MAMBA_GUIDE.md b/CEPM/UV_MAMBA_GUIDE.md new file mode 100644 index 000000000..7a5d809f0 --- /dev/null +++ b/CEPM/UV_MAMBA_GUIDE.md @@ -0,0 +1,77 @@ +# Translating between `environment.yml` (mamba/conda) and `pyproject.toml`/`uv.lock` (uv) + +This repo keeps both, per the decision to keep `environment.yml` as the +upstream-compatible fallback and `pyproject.toml`/`uv.lock` as RMI's primary +path (see `pyproject.toml` at repo root and `dev`'s `environment.yml`). +Whenever one changes, the other should be updated by hand — there's no +automatic converter, so this is a manual mapping. + +## Automated drift check + +`CEPM/check_env_sync.py` compares the two files and warns when they drift beyond +a hard-coded allowlist of intentional exceptions (the "known-accepted" cases +below). `run_cepm.ps1` runs it as a non-fatal step, or run it directly: + +```bash +uv run python CEPM/check_env_sync.py +``` + +It reports three things: packages only in one file and packages pinned to +incompatible versions. Exit code `0` means aligned (all differences are on the +allowlist); `1` means new/unexpected drift. When you intentionally add an +exception, update both the allowlist in `CEPM/check_env_sync.py` and the +"Known current drift" / "Things that don't map 1:1" sections below so the two +stay in agreement. + +## Structural mapping + +| environment.yml | pyproject.toml | Notes | +|---|---|---| +| `name: reeds2` | `[project] name = "ReEDS"` | Names don't have to match; conda's is the env name, uv's is the package/distribution name. | +| `dependencies: - python=3.11` | `[project] requires-python = "==3.11.*"` | Also mirrored in `.python-version` (`3.11`). | +| `dependencies:` (conda channel packages, no `pip:` block) | `[project] dependencies = [...]` | Top-level conda deps → top-level uv deps. | +| `dependencies: - pip: - ...` (the nested pip list) | `[project] dependencies = [...]` | Conda draws a line between conda-channel and pip-installed packages; uv doesn't — everything just goes in one `dependencies` list. | +| Comment-delimited "optional" blocks (`## vvv ... ## ^^^`) | `[project.optional-dependencies]` groups (`interactive`, `maps`, `docs`, `reporting`, `network`, `testing`, `dev`) | conda has no native optional-group syntax, so mvp used a comment convention. uv has real extras — prefer putting new optional packages in the right extras group instead of a top-level comment block. | +| version pins like `bokeh=3.2` | `"bokeh==3.2.*"` | conda's single `=` is a "starts with" match; uv/pip needs `==` plus an explicit `.*` to get the same "any patch version" behavior. | +| N/A | `dev = [...]` group | uv's `dev` extra is just a bundle of the others (currently duplicates `interactive` + `maps` + `docs` + `reporting` + `network` + `testing`). Keep it in sync manually — there's no "include another extra" syntax in this pyproject's toml version. | + +## Adding a new dependency + +1. **Figure out where it's used.** Is it a hard runtime dependency (imported directly in `reeds/`, `hourlize/`, or `runreeds.py`) or something only needed for docs/interactive/testing? +2. **Add it to `environment.yml`:** + - If it's on conda-forge/defaults, add it as a top-level line under `dependencies:` with a conda-style pin (`package=X.Y`). + - If it's pip-only, add it under the nested `pip:` list with a `==X.Y.Z` pin. + - If it's optional, put it inside the commented `## vvv ... ## ^^^` block (top-level optional) or the nested pip optional block. +3. **Add it to `pyproject.toml`:** + - Hard dependency → `[project.dependencies]`, using `==X.Y.*` (or an exact pin if you want to match conda's pin precisely). + - Optional → the matching `[project.optional-dependencies]` group, **and** add it to the `dev` group too if `dev` is supposed to be "everything." +4. **Regenerate the lockfile:** `uv lock` (or `uv sync --extra dev` if you also want your local venv updated). Don't hand-edit `uv.lock`. +5. **Sanity-check both paths still work:** + - `uv sync --extra dev && uv run python runreeds.py -h` + - `mamba env update -f environment.yml` (or recreate the env) if you're validating the conda side too. + +## Removing a dependency + +Same as above in reverse — pull it from both files, then `uv lock` to drop it (and anything only it depended on) from `uv.lock`. + +## Things that don't map 1:1 + +- **Non-Python packages.** `environment.yml` has `git-lfs=2.13` and `mscorefonts=0.0` — these aren't pip-installable and have no uv equivalent. They just don't appear in `pyproject.toml`; document them in setup docs instead. +- **`pip` itself and its version.** conda pins `pip=23.2` as a bootstrap tool; uv manages its own resolver, so this has no uv equivalent either. +- **Exact vs. fuzzy pins.** conda's `package=X.Y` conventionally means "X.Y.* is fine"; the uv side in this repo mostly uses explicit `==X.Y.*` to match that intent, but a few packages (`tables`, `gdxpds`, `geopandas`, `pulp`, `shapely`, `cmocean`) are pinned to an exact patch version in `pyproject.toml` where conda only pins minor. If you tighten/loosen a pin on one side, consider whether the other side should match. +- **PyTables naming and version drift.** conda's package is `pytables`, but its importable/pip name is `tables`, so it appears as `pytables=3.8` in `environment.yml` and `tables==3.11.1` in `pyproject.toml`. These are currently different minor versions — a real drift, not just a naming difference. Reconcile the version if the two paths are meant to match. +- **Git-sourced packages.** `rmi.etoolbox @ git+https://github.com/rmi/etoolbox.git` in `pyproject.toml` has no equivalent line in `environment.yml` yet — conda's `pip:` block *can* take a `git+https://...` URL the same way, so if `environment.yml` needs to stay fully equivalent, add a matching line there. + +## Known pre-existing gaps (not introduced by this cleanup, not yet fixed) + +A few packages are imported directly in `postprocessing/` (`jinja2`, `loguru`, `lxml`, `seaborn`, `six`) but aren't declared as explicit dependencies in *either* file — they currently work only because something else pulls them in transitively. This gap already exists on the `dev`/upstream base itself, independent of the RMI rebase, so it wasn't in scope for the pyproject.toml restoration. Worth its own follow-up if these ever stop being transitively satisfied. + +## Known current drift between the two files + +Both files now exist at the repo root, and a few packages are out of sync +(worth reconciling next time either file is touched): + +- `pyyaml` is declared in `pyproject.toml` but missing from `environment.yml`. +- `proj==0.2.0` is in `environment.yml`'s `pip:` block but has no entry in + `pyproject.toml`. +- `pytables=3.8` (conda) vs `tables==3.11.1` (uv) — see the PyTables note above. diff --git a/CEPM/check_env_sync.py b/CEPM/check_env_sync.py new file mode 100644 index 000000000..a61abf785 --- /dev/null +++ b/CEPM/check_env_sync.py @@ -0,0 +1,218 @@ +"""Check that environment.yml (mamba/conda) and pyproject.toml (uv) stay aligned. + +RMI/CEPM keeps `environment.yml` as an upstream-compatible conda/mamba fallback +and `pyproject.toml`/`uv.lock` as the primary uv path (see +CEPM/UV_MAMBA_GUIDE.md). There is no automatic converter, so the two are kept in +sync by hand and drift easily. This script reports drift and warns only when it +finds a difference that is NOT already on the known-accepted allowlist below. + +It is intentionally stdlib-only (tomllib is in Python 3.11) so it can run as a +bootstrap step without depending on a fully synced environment. + +Exit codes: + 0 aligned (all differences are on the allowlist) + 1 unexpected drift found (bootstrap turns this into a warning, not a failure) + 2 could not run the check (e.g. a file is missing or unparseable) + +Keeping the allowlist current: as drift is reconciled, remove entries here. The +script also notes allowlist entries that no longer apply, so the list does not +silently rot. +""" + +import os +import re +import sys +import tomllib + +# --- Known-accepted exceptions (see CEPM/UV_MAMBA_GUIDE.md) ------------------ + +# Packages expected to live ONLY in environment.yml -- no uv/pip equivalent by +# nature (non-Python packages, conda bootstrap tooling, the interpreter itself). +CONDA_ONLY_OK = {"git-lfs", "mscorefonts", "pip", "python"} + +# Packages expected to live ONLY in pyproject.toml (e.g. git-sourced deps that +# have no conda-channel equivalent line yet). +UV_ONLY_OK = {"rmi-etoolbox"} + +# Currently-accepted drift, documented in CEPM/UV_MAMBA_GUIDE.md. Trim as fixed. +KNOWN_DRIFT_CONDA_ONLY = {"proj"} # in environment.yml, not in pyproject +KNOWN_DRIFT_UV_ONLY = {"pyyaml"} # in pyproject, not in environment.yml +KNOWN_VERSION_MISMATCH = {"tables"} # pytables 3.8 (conda) vs tables 3.11.1 (uv) + +# conda package name -> pip/import name, so the same package matches across files. +NAME_ALIASES = {"pytables": "tables"} + + +def normalize(name): + """PEP 503-style normalization (collapse runs of . _ - to a single -) plus + conda->pip aliasing.""" + n = re.sub(r"[-_.]+", "-", name.strip().lower()) + return NAME_ALIASES.get(n, n) + + +def _clean_version(ver): + """Strip a trailing '.*' / '*' wildcard and surrounding dots/space.""" + ver = ver.strip().rstrip("*").rstrip(".").strip() + return ver or None + + +def split_conda_spec(item): + """Parse a conda/pip dependency line ('bokeh=3.2', 'pulp==2.7.0', 'python').""" + for sep in ("==", "="): + if sep in item: + name, _, ver = item.partition(sep) + return name.strip(), _clean_version(ver) + return item.strip(), None + + +def parse_requirement(spec): + """Parse a PEP 508 requirement from pyproject ('bokeh==3.2.*', 'x @ git+...').""" + spec = spec.strip() + if " @ " in spec: # url/git form: 'name @ https://...' + return spec.split(" @ ", 1)[0].strip(), None + match = re.match(r"^([A-Za-z0-9_.\-]+)\s*(.*)$", spec) + if not match: + return spec, None + name, rest = match.group(1), match.group(2) + ver_match = re.search(r"==\s*([0-9][0-9A-Za-z.\-]*)", rest) + ver = _clean_version(ver_match.group(1)) if ver_match else None + return name, ver + + +def parse_environment_yml(path): + """Minimal parser for our environment.yml -> {normalized_name: version|None}. + + Tailored to this file's shape (a top-level `dependencies:` list plus a nested + `- pip:` list); not a general YAML parser. Both conda-channel and pip entries + are collected into one map since the comparison is by package, not channel. + """ + deps = {} + in_deps = False + with open(path, encoding="utf-8") as handle: + for raw in handle: + line = raw.rstrip("\n") + if "#" in line: # drop inline/full-line comments (incl. '## vvv' blocks) + line = line[: line.index("#")] + stripped = line.strip() + if not stripped: + continue + if stripped == "dependencies:": + in_deps = True + continue + if not in_deps: + continue + indent = len(line) - len(line.lstrip(" ")) + # A new top-level key (e.g. `channels:`) ends the dependencies block. + if indent == 0 and not stripped.startswith("-"): + in_deps = False + continue + if not stripped.startswith("-"): + continue + item = stripped[1:].strip() # drop the leading '- ' + if not item or item.rstrip(":") == "pip": # the '- pip:' sub-list header + continue + name, version = split_conda_spec(item) + if name: + deps[normalize(name)] = version + return deps + + +def parse_pyproject(path): + """Return {normalized_name: version|None} across dependencies + all extras.""" + with open(path, "rb") as handle: + data = tomllib.load(handle) + project = data.get("project", {}) + specs = list(project.get("dependencies", [])) + for group in project.get("optional-dependencies", {}).values(): + specs.extend(group) + deps = {} + for spec in specs: + name, version = parse_requirement(spec) + if name: + deps[normalize(name)] = version + return deps + + +def versions_align(conda_ver, uv_ver): + """True if versions are compatible. conda's 'X.Y' means 'X.Y.*', so treat a + shorter version as a prefix match of the longer one (e.g. 3.2 ~ 3.2.*).""" + if conda_ver is None or uv_ver is None: + return True # nothing to compare (e.g. a git dep with no pinned version) + left = conda_ver.split(".") + right = uv_ver.split(".") + shared = min(len(left), len(right)) + return left[:shared] == right[:shared] + + +def main(): + repo_root = os.path.dirname(os.path.dirname(os.path.abspath(__file__))) + if len(sys.argv) == 3: # optional explicit paths, mostly for testing + env_path, pyproject_path = sys.argv[1], sys.argv[2] + else: + env_path = os.path.join(repo_root, "environment.yml") + pyproject_path = os.path.join(repo_root, "pyproject.toml") + + try: + env_deps = parse_environment_yml(env_path) + uv_deps = parse_pyproject(pyproject_path) + except FileNotFoundError as exc: + print(f"[check_env_sync] could not read a dependency file: {exc}") + return 2 + except Exception as exc: # never let this check crash the bootstrap + print(f"[check_env_sync] failed to parse dependency files: {exc}") + return 2 + + env_names = set(env_deps) + uv_names = set(uv_deps) + + conda_only = env_names - uv_names + uv_only = uv_names - env_names + mismatches = { + name + for name in (env_names & uv_names) + if not versions_align(env_deps[name], uv_deps[name]) + } + + unexpected_conda_only = sorted(conda_only - CONDA_ONLY_OK - KNOWN_DRIFT_CONDA_ONLY) + unexpected_uv_only = sorted(uv_only - UV_ONLY_OK - KNOWN_DRIFT_UV_ONLY) + unexpected_mismatch = sorted(mismatches - KNOWN_VERSION_MISMATCH) + + # Note allowlist entries that no longer apply, so the list does not rot. + stale_allowlist = sorted( + (KNOWN_DRIFT_CONDA_ONLY - conda_only) + | (KNOWN_DRIFT_UV_ONLY - uv_only) + | (KNOWN_VERSION_MISMATCH - mismatches) + ) + + has_drift = bool(unexpected_conda_only or unexpected_uv_only or unexpected_mismatch) + + if has_drift: + print("[check_env_sync] Unexpected drift between environment.yml and pyproject.toml:") + for name in unexpected_conda_only: + print(f" - only in environment.yml: {name} ({env_deps[name] or 'no pin'})") + for name in unexpected_uv_only: + print(f" - only in pyproject.toml: {name} ({uv_deps[name] or 'no pin'})") + for name in unexpected_mismatch: + print( + f" - version mismatch: {name} " + f"(environment.yml={env_deps[name]} vs pyproject.toml={uv_deps[name]})" + ) + print( + " Update both files, or add an intentional exception to the allowlist " + "in CEPM/check_env_sync.py (and note it in CEPM/UV_MAMBA_GUIDE.md)." + ) + else: + print("[check_env_sync] environment.yml and pyproject.toml are aligned " + "(all differences are on the known-accepted allowlist).") + + if stale_allowlist: + print( + "[check_env_sync] note: these allowlist entries no longer drift and can " + f"be removed from CEPM/check_env_sync.py: {', '.join(stale_allowlist)}" + ) + + return 1 if has_drift else 0 + + +if __name__ == "__main__": + sys.exit(main()) diff --git a/docs/internal-ci-testing.md b/CEPM/internal-ci-testing.md similarity index 91% rename from docs/internal-ci-testing.md rename to CEPM/internal-ci-testing.md index 8ca7f74c7..86c3002fe 100644 --- a/docs/internal-ci-testing.md +++ b/CEPM/internal-ci-testing.md @@ -76,9 +76,9 @@ Expected directories include: Run each scenario exactly as CI does: ```bash -python runbatch.py -b test -c test -s github_Pacific -python runbatch.py -b test -c test -s github_Everything -python runbatch.py -b test -c test -s github_MA_county_CC +python runreeds.py -b test -c test -s github_Pacific +python runreeds.py -b test -c test -s github_Everything +python runreeds.py -b test -c test -s github_MA_county_CC ``` Run folders should be created at: @@ -115,12 +115,12 @@ Also inspect diagnostics if needed: ## 7) Run R2X compatibility checks (optional but recommended parity) -CI executes `scripts/run_r2x.py` for each scenario. Reproduce locally after successful ReEDS runs. +CI executes `postprocessing/run_r2x.py` for each scenario. Reproduce locally after successful ReEDS runs. If using `uvx` as in CI: ```bash -uvx --from "r2x-reeds>=0.3.5" python scripts/run_r2x.py \ +uvx --from "r2x-reeds>=0.3.5" python postprocessing/run_r2x.py \ --reeds-run-path "github_Pacific-2029" \ --scenario "github_Pacific" \ --solve-year "2029" \ diff --git a/README.md b/README.md index 86a63cd07..4fe94d8a7 100644 --- a/README.md +++ b/README.md @@ -1,18 +1,17 @@ -## ReEDS +# ReEDS + **Regional Energy Deployment System (ReEDS) Model** - [![CI](https://github.com/ReEDS-Model/ReEDS/actions/workflows/python-app.yaml/badge.svg?branch=main)](https://github.com/ReEDS-Model/ReEDS/actions/workflows/python-app.yaml) [![Documentation](https://img.shields.io/badge/Documentation-view%20online-0a7f5e?logo=readthedocs&logoColor=white&labelColor=555)](https://reeds-model.github.io/ReEDS) ![Static Badge](https://img.shields.io/badge/python-3.11-blue) ![GitHub License](https://img.shields.io/github/license/ReEDS-Model/ReEDS) [![DOI](https://zenodo.org/badge/189060033.svg)](https://doi.org/10.5281/zenodo.16943302) -
-
- This GitHub repository contains the source code for NLR's ReEDS model. + The ReEDS model source code is available at no cost from the National Laboratory of the Rockies. + The ReEDS model can be downloaded or cloned from [https://github.com/ReEDS-Model/ReEDS](https://github.com/ReEDS-Model/ReEDS). If you want to use the latest stable version of ReEDS, download or check out the latest stable release [here](https://github.com/ReEDS-Model/ReEDS/releases/latest). @@ -21,60 +20,225 @@ If you want to use the latest stable version of ReEDS, download or check out the ReEDS training videos are available on the [NLR Learning YouTube channel](https://youtube.com/playlist?list=PLmIn8Hncs7bG558qNlmz2QbKhsv7QCKiC&si=NgGBaL_MxNcYiIEX). - - - - ## Introduction [ReEDS](https://www.nlr.gov/analysis/reeds/) is a capacity planning and dispatch model for the U.S. electricity system. As NLR's flagship long-term power sector model, ReEDS has served as the primary analytic tool for [many studies](https://reeds-model.github.io/ReEDS/publications.html) of electricity sector research questions. -Example model results are available in the [Scenario Viewer](https://scenarioviewer.nlr.gov/). - - - - +Example model results are available in the [Scenario Viewer](https://scenarioviewer.nlr.gov/). ## Quick-start guide The ReEDS model is written in [Python](https://www.python.org/), [GAMS](https://www.gams.com/), and [Julia](https://julialang.org/). -Python and Julia are free, open-source languages; + +Python and Julia are free, open-source languages. + GAMS requires a software license from the vendor. + A step-by-step guide for getting started with ReEDS is available [here](https://reeds-model.github.io/ReEDS/setup.html), and a quick-start guide for advanced users is outlined below. -1. Install Python using the Anaconda Distribution: -2. Set up GAMS: - 1. Install GAMS: - 2. Obtain a combined GAMS/CPLEX license: - 1. Small ReEDS systems have been solved using the open-source [COIN-OR](https://www.coin-or.org/) solver as described [here](https://www.nlr.gov/docs/fy21osti/77907.pdf), but this capability is not actively maintained. - 2. Other commercial solvers have also been successfully applied to ReEDS, but setup details and some solver tuning are specific to the CPLEX solver. -3. Install Julia version 1.12.1 as described in the [documentation](https://reeds-model.github.io/ReEDS/setup.html#reeds2pras-julia-and-stress-periods-setup): - 1. Follow the platform-dependent installation instructions at to install both `julia` and `juliaup` - 2. Specify version 1.12.1 by running: - 1. `juliaup add 1.12.1` - 2. `juliaup default 1.12.1` -4. Open a command-line interface and set up your environments: - 1. Clone the ReEDS repository: `git clone git@github.com:ReEDS-Model/ReEDS.git` or `git clone https://github.com/ReEDS-Model/ReEDS.git` - 2. Navigate to the cloned repository - 3. Create the `reeds2` [conda environment](https://docs.conda.io/projects/conda/en/stable/user-guide/tasks/manage-environments.html): `conda env create -f environment.yml` - 4. Activate the `reeds2` environment: `conda activate reeds2` - 5. Instantiate the Julia environment: `julia --project=. instantiate.jl` - 6. (Optional) Several large data files are hosted remotely. - These files are downloaded automatically as needed during a ReEDS run, but to finish all the internet-requiring steps up front, you can download them all by running `python reeds/remote.py`. - Additional details on remote files and other topics can be found in the [user guide](https://reeds-model.github.io/ReEDS/user_guide.html#large-input-files). -5. Run ReEDS on a test case from the root of the cloned repository: - 1. For interactive setup: `python runreeds.py` - 2. For one-line operation: `python runreeds.py -b v20250314_main -c test`. - In this example, "v20250314_main" is the prefix for this batch of cases, and "test" is the suffix of the cases file, in this case `cases_test.csv`, located in the root of the repository. - Run `python runreeds.py -h` for information on other optional command-line arguments for ReEDS. - - - - - +### 1. Install UV and Python + +Install UV: + +```bash +curl -LsSf https://astral.sh/uv/install.sh | sh +``` + +Restart your terminal, then install Python 3.11: + +```bash +uv python install 3.11 +``` + +### 2. Set up GAMS + +1. Install GAMS: +2. Obtain a combined GAMS/CPLEX license: + +Small ReEDS systems have been solved using the open-source [COIN-OR](https://www.coin-or.org/) solver as described [here](https://www.nlr.gov/docs/fy21osti/77907.pdf), but this capability is not actively maintained. + +Other commercial solvers have also been successfully applied to ReEDS, but setup details and some solver tuning are specific to the CPLEX solver. + +Ensure the `gams` executable is available on your PATH: + +```bash +gams +``` + +GAMS typically installs directly into the top level directory, with a version number. A typical way to add gams to your user PATH variable in powershell is: + +```bash +$currentPath = [Environment]::GetEnvironmentVariable("Path","User") #This gets the PATH Environment variable at the user scope +$addPath = 'C:/GAMS/53' # or wherever your gams install is +[Environment]::SetEnvironmentVariable("Path","$addPath;$currentPath","User") +``` + +### 3. Install Julia + +Install Julia using `juliaup`: + +```bash +curl -fsSL https://install.julialang.org | sh +``` + +Install the required Julia version: + +```bash +juliaup add 1.12.1 +juliaup default 1.12.1 +``` + +Verify: + +```bash +julia --version +``` + +### 4. Set up the ReEDS environment + +Clone the repository: + +```bash +git clone https://github.com/ReEDS-Model/ReEDS.git +cd ReEDS +``` + +Pin Python 3.11 for the project: + +```bash +uv python pin 3.11 +``` + +Create the UV-managed Python environment: + +```bash +uv sync --extra dev +``` + +Instantiate the Julia environment: + +```bash +julia --project=. instantiate.jl +``` + +Link large data files from shared folder, so we each don't store separate instances of this ~95GB of input data. Note you cannot do this in git bash as +there are some type of strange permission issues, so use powershell: + +```powershell +New-Item -ItemType Junction -Path ".\inputs\remote" -Target "C:\Users\Public\Documents\reeds_data\remote" +``` + +Several large data files are hosted remotely. These files are downloaded automatically as needed during a ReEDS run, but the command above finishes all internet-requiring steps up front. + +Additional details on remote files and other topics can be found in the [user guide](https://reeds-model.github.io/ReEDS/user_guide.html#large-input-files). + +### 4.5 Optional PowerShell setup-and-run command (`run_cepm.ps1`) + +Once you've cloned the repository, you can use the optional PowerShell helper `run_cepm.ps1` to +ensure supporting software is up to date and then immediately run runreeds.py: + +```powershell +.\run_cepm.ps1 +``` + +This script performs the following steps in order: +1. Verifies GAMS is on PATH, checks GAMS license status, and prints a detected version string. +2. Verifies Julia is on PATH and checks that the version is `1.12.1`. +3. Sets ReEDS environment variables for the current PowerShell session. +4. Checks that Python is pinned to 3.11 and runs `uv python pin 3.11` if needed. +5. Runs `uv sync --extra dev`. +6. Instantiates Julia dependencies only when needed: a fast offline check (`Pkg.instantiate` without a registry update) skips the work when the environment is already current, and only falls back to the full `julia --project=. instantiate.jl` (which updates the registry) if dependencies changed or are missing. +7. Checks `environment.yml` against `pyproject.toml` and prints a non-fatal warning if they have drifted beyond the known-accepted allowlist (see `CEPM/UV_MAMBA_GUIDE.md`). +8. Forwards all arguments to `runreeds.py`. +9. Sends a best-effort [ntfy.sh](https://ntfy.sh) notification (topic `rmi-cepm-run-batch-finished`) before `runreeds.py` is launched and once it returns (on fail or success), so you can be alerted when a long-running batch finishes. Subscribe to the topic in the ntfy app or at . A failed or offline notification is ignored. A failed or offline notification is ignored. Note: ntfy.sh topics are public; avoid including sensitive information in notifications. + +Passing `-y` (or `--skip-setup` / `--bypass`) skips Step 5 (`uv sync --extra dev`) and Step 6 (Julia instantiation). +All other checks and setup steps still run, and remaining arguments are still passed to `runreeds.py` + +Two more bootstrap-only options: `-q` (or `--quiet`) disables the ntfy.sh notifications, and `-u ` (or `--user `) includes `` as the username in the notification messages (omitted when not given). All other arguments are forwarded to `runreeds.py`. + +```powershell +.\run_cepm.ps1 -y -b v20250314_main -c test +.\run_cepm.ps1 --bypass -b v20250314_main -c test +``` + +### 5. Run ReEDS + +ReEDS currently expects Conda-style environment variables. When using UV, set these variables before running ReEDS or ideally in your dotenv file, so you don't ahve to do this before every run. + +```bash +export CONDA_DEFAULT_ENV=reeds2 +export CONDA_PREFIX="$PWD/.venv" +``` + +For interactive setup: + +```bash +uv run python runreeds.py +``` + +For one-line operation: + +```bash +uv run python runreeds.py -b v20260605 -c cepm +``` + +In this example, `v20260605` is the prefix for this batch of cases, and `cepm` is the suffix of the cases file, in this case `cases_cepm.csv`, located in the root of the repository. For the batch prefix, we should follow the convention `vYYYYMMDD`, and note that the case ID from the cases file will be appended to the batch prefix for file naming purposes (e.g., `WECC_county_100by2050`). + +Run the following for information on other optional command-line arguments: + +```bash +uv run python runreeds.py -h +``` + +PowerShell users can run setup + launch in one command with `run_cepm.ps1`: + +```powershell +.\run_cepm.ps1 -b v20250314_main -c test +``` + +## Troubleshooting + +### GAMS is not found + +Confirm that GAMS is available on your PATH: + +```bash +gams +``` + +If this fails, update your shell PATH to include the GAMS installation directory. + +### Julia setup fails + +Re-run: + +```bash +julia --project=. instantiate.jl +``` + +### Python environment issues + +Recreate the UV environment: + +```bash +rm -rf .venv uv.lock +uv sync --extra dev +``` + +### `CONDA_DEFAULT_ENV` error + +When running with UV, set: + +```bash +export CONDA_DEFAULT_ENV=reeds2 +export CONDA_PREFIX="$PWD/.venv" +``` + +Then rerun the command with `uv run`. ## Contact Us -If you have comments and/or questions, you can contact the ReEDS team at [ReEDS.Inquiries@nlr.gov](mailto:ReEDS.Inquiries@nlr.gov) or post a question on the [discussion pages](https://github.com/ReEDS-Model/ReEDS/discussions). +If you have comments and/or questions, contact the ReEDS team at [ReEDS.Inquiries@nlr.gov](mailto:ReEDS.Inquiries@nlr.gov) or post a question on the [discussion pages](https://github.com/ReEDS-Model/ReEDS/discussions). diff --git a/cases_cepm.csv b/cases_cepm.csv new file mode 100644 index 000000000..f181f1023 --- /dev/null +++ b/cases_cepm.csv @@ -0,0 +1,62 @@ +,Default Value,github_MA_county_CC,CO_county_IRAlow,CO_county_100by2050,WECC_county,East_134,PJM_county_CC,NYVT_mixed +ignore,1,1,1,1,1,0,1,1 +GSw_Region,cendiv/Pacific,st/MA,st/CO,st/CO,interconnect/western,interconnect/eastern,transreg/PJM,st/NY.VT +GSw_ZoneSet,,z3109,z3109,z3109,z3109,z134,z3109,PJMcounty +endyear,2032,2026,,,,,, +yearset,,,,,,,, +GSw_GasCurve,2,,,,,,, +GSw_Geothermal,,,,,,,, +GSw_GrowthPenalties,,,,,,,, +GSw_Upstream,,,,,,,, +GSw_TransHurdleRate,,,,,,,, +distpvscen,,,,,,,, +GSw_AnnualCap,,,,,,,, +GSw_AnnualCapScen,,,,,,,, +GSw_LoadProfiles,,EER2025_IRAlow,,EER2025_100by2050,,,, +GSw_NG_CRF_penalty,,,,,,,, +GSw_PRM_NetImportLimit,,,,,,,, +GSw_RetirePenalty,,,,,,,, +GSw_FakeData,,1,,,,,, +GSw_PRM_CapCredit,,1,,,,,1, +GSw_PRM_scenario,,,,,,,static, +GSw_HourlyType,,,,,,,, +GSw_InterDayLinkage,,,,,,,, +GSw_HourlyWeatherYears,,,,,,,, +GSw_WaterCapacity,,,,,,,, +GSw_WaterMain,,,,,,,, +GSw_WaterUse,,,,,,,, +resource_adequacy_years,,,,,,,, +GSw_HourlyClusterAlgorithm,,,,,,,, +MCS_runs,,,,,,,, +MCS_dist_groups,,,,,,,, +GSw_PRM_StressIterateMax,,0,,,0,0,0, +GSw_ReducedResource,,,,,,,, +GSw_SitingUPV,,limited,,,,,, +GSw_SitingWindOfs,,limited,,,,,, +GSw_SitingWindOns,,limited,,,,,, +GSw_TransScen,,,,,,,, +GSw_CO2_Detail,,,,,,,, +GSw_DAC,,,,,,,, +GSw_NoFossilOffsetCDR,,,,,,,, +GSw_Biopower,,,,,,,, +GSw_HourlyChunkLengthRep,,,,,,,, +GSw_HourlyChunkLengthStress,,,,,,,, +GSw_LfillGas,,,,,,,, +GSw_Nuclear,,,,,,,, +GSw_OpRes,,,,,,,, +GSw_StartCost,,,,,,,, +GSw_H2,,,,,,,, +GSw_H2_PTC,,,,,,,, +GSw_H2Combustion,,,,,,,, +GSw_DRShed,,,,,,,, +GSw_MGA_CostDelta,,,,,,,, +GSw_LoadSiteCF,,,,,,,, +GSw_OffshoreZones,,,,,,,, +GSw_OffshoreBackbone,,,,,,,, +GSw_OffshoreBackflow,,,,,,,, +pras_agg_ogs_lfillgas,,,,,,,, +pras_existing_unit_size,,,,,,,, +pras_scheduled_outage,,,,,,,, +pras_unitsize_source,,,,,,,, +pras_vre_combine,,,,,,,, +pras_samples,,10,,,,,, diff --git a/hourlize/pyproject.toml b/hourlize/pyproject.toml index debef993c..cf7df7763 100644 --- a/hourlize/pyproject.toml +++ b/hourlize/pyproject.toml @@ -15,6 +15,3 @@ docs = [ "sphinx", "myst-parser", ] - - - diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 000000000..b8fac1ad2 --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,94 @@ +[build-system] +requires = ["setuptools>=68", "wheel"] +build-backend = "setuptools.build_meta" + +[project] +name = "ReEDS" +version = "2024.0.0" +requires-python = "==3.11.*" +description = "ReEDS-2.0 Python environment managed with uv" +readme = "README.md" +dependencies = [ + "bokeh==3.2.*", + "click==8.0.*", + "gitpython==3.1.*", + "h5py==3.9.*", + "matplotlib==3.7.*", + "numpy==1.26.*", + "openpyxl==3.0.*", + "pandas==2.0.*", + "tables==3.11.1", + "pytest==7.4.*", + "requests==2.31.*", + "scikit-learn==1.2.*", + "scipy==1.11.*", + "tqdm==4.65.*", + "cmocean==3.0.3", + "gdxpds==1.4.0", + "geopandas==0.14.0", + "pulp==2.7.0", + "shapely==2.0.1", + "pyyaml==6.0.*", + # etoolbox provides a number of useful tools for working with data. It also includes + # functions and infrastructure for accessing PUDL data stored on GCS so the sqlite + # database is not requried + "rmi.etoolbox @ git+https://github.com/rmi/etoolbox.git", +] + +[project.optional-dependencies] +interactive = [ + "ipykernel==6.25.*", + "ipywidgets==8.0.*", + "notebook==6.5.*", +] + +maps = [ + "fiona==1.9.5", + "folium==0.14.0", + "mapclassify==2.5.*", + "pyproj==3.6.1", +] + +docs = [ + "sphinx==7.2.6", + "myst-parser==2.0.0", + "sphinx-rtd-theme==2.0.0", + "sphinxcontrib-bibtex==2.6.2", +] + +reporting = [ + "python-pptx==0.6.22", +] + +network = [ + "networkx==3.1.*", +] + +testing = [ + "gamspy-base==50.5.0", +] + +dev = [ + "ipykernel==6.25.*", + "ipywidgets==8.0.*", + "notebook==6.5.*", + "fiona==1.9.5", + "folium==0.14.0", + "mapclassify==2.5.*", + "pyproj==3.6.1", + "sphinx==7.2.6", + "myst-parser==2.0.0", + "sphinx-rtd-theme==2.0.0", + "sphinxcontrib-bibtex==2.6.2", + "python-pptx==0.6.22", + "networkx==3.1.*", + "gamspy-base==50.5.0", +] + +[tool.setuptools] +include-package-data = true + +[tool.setuptools.packages.find] +where = ["."] +include = ["hourlize*", "reeds*"] +exclude = ["inputs*"] diff --git a/reeds/input_processing/recf.py b/reeds/input_processing/recf.py index 40204f8d9..277f40705 100644 --- a/reeds/input_processing/recf.py +++ b/reeds/input_processing/recf.py @@ -369,6 +369,9 @@ def main(reeds_path, inputs_case): resource_adequacy_years ) df_windofs.columns = ['wind-ofs_' + col for col in df_windofs] + else: + # Keep concat inputs consistent when offshore wind is disabled. + df_windofs = pd.DataFrame(index=df_windons.index) ### UPV df_upv = calculate_class_region_cf_hourly( diff --git a/reeds/resource_adequacy/reeds2pras/README.md b/reeds/resource_adequacy/reeds2pras/README.md index 4662cb6f2..e9d6496c0 100644 --- a/reeds/resource_adequacy/reeds2pras/README.md +++ b/reeds/resource_adequacy/reeds2pras/README.md @@ -69,14 +69,14 @@ It is always good practice to include new tests if the current tests don't cover You can run ReEDS2PRAS tests by running: ```shell -cd ReEDS/reeds2pras/test +cd ReEDS/reeds/resource_adequacy/reeds2pras/test julia --project runtests.jl ``` or ```shell -cd ReEDS/reeds2pras/test +cd ReEDS/reeds/resource_adequacy/reeds2pras/test julia --project ``` diff --git a/run_cepm.ps1 b/run_cepm.ps1 new file mode 100644 index 000000000..29153625b --- /dev/null +++ b/run_cepm.ps1 @@ -0,0 +1,318 @@ +<# +run_cepm.ps1 -- set up the ReEDS environment and launch a ReEDS run (RMI/CEPM). + +What this script does: +1) Verifies GAMS is on PATH, checks GAMS license status, and prints a detected version string. +2) Verifies Julia is on PATH and exactly version 1.12.1. +3) Sets ReEDS-required CONDA-style environment variables in the current PowerShell session. +4) Checks the project Python pin and runs `uv python pin 3.11` when not pinned to 3.11. +5) Runs `uv sync --extra dev` to ensure the Python environment matches project dependencies (unless bypass mode is enabled). +6) Instantiates Julia dependencies only when needed: a fast offline instantiate checks/heals the environment, falling back to the full `julia --project=. instantiate.jl` (which updates the registry) only if that can't satisfy the project (unless bypass mode is enabled). +7) Checks environment.yml against pyproject.toml and warns (non-fatal) on dependency drift beyond the known-accepted allowlist in CEPM/check_env_sync.py. +8) Starts runreeds.py and forwards any arguments passed to this script. +9) Sends an ntfy.sh notification (topic: rmi-cepm-run-batch-finished) before runreeds.py launches and once it returns. Best-effort: a failed or offline notification is ignored. Disabled with -q/--quiet; -u/--user adds a username to the message. + + +BOOTSTRAP-ONLY OPTIONS (consumed here; everything else is forwarded to runreeds.py): + -y, --bypass, --skip-setup + Bypass mode: skip Step 5 (`uv sync --extra dev`) and Step 6 (Julia + instantiation). Other checks/setup steps still run. + -q, --quiet + Disable the ntfy.sh notifications (both the pre-launch ping and Step 9). + -u, --user (also --user=) + Include as the username in the ntfy messages. When omitted, no + username is shown. + +RESERVED OPTIONS (do NOT add a bootstrap-only flag that reuses these): + All args other than the bootstrap-only options above are forwarded verbatim to + runreeds.py, so any short/long option runreeds.py defines is off-limits for this + script to claim for itself. As of this writing runreeds.py uses: + -b/--BatchName -c/--cases_suffix -s/--single -r/--simult_runs + -l/--forcelocal -f/--skip_checks -d/--debug -n/--debugnode + -p/--cases_per_node -t/--dryrun + (plus -h/--help from argparse). The bootstrap-only options above (-y, -q, -u) + were chosen to avoid these. If you add a new bootstrap-only switch, pick a + letter outside that set (and re-check against runreeds.py, which may change). + +Usage examples: + .\run_cepm.ps1 + .\run_cepm.ps1 -b v20260625_test -c test + .\run_cepm.ps1 -y -b v20260625_test -c test + .\run_cepm.ps1 --bypass -b v20260625_test -c test + .\run_cepm.ps1 -q -b v20260625_test -c test + .\run_cepm.ps1 -u "Tyler Fitch" -b v20260625_test -c test +#> + +# Initializing functions and variables for this script. + +# Accept and forward all remaining command-line args to runreeds.py. +param( + [switch]$y, # Bypass mode for skipping uv sync and Julia instantiate. We use y to prevent collision with runreeds options. + [switch]$q, # Quiet: disable the ntfy.sh notifications. -q is free of runreeds options. + [string]$u = '', # Username string to include in ntfy messages. -u is free of runreeds options. + + [Parameter(ValueFromRemainingArguments = $true)] + [string[]]$RunbatchArgs +) + +# Copy forwarded args and pull out our long-form tokens. PowerShell binds the short +# switches (-y/-q/-u) natively; the double-dash long forms are not real PowerShell +# parameters, so we strip them from the forwarded args by hand. Everything left is +# forwarded verbatim to runreeds.py. +$ForwardArgs = @($RunbatchArgs) +if ($ForwardArgs -contains '--bypass') { + $y = $true + $ForwardArgs = @($ForwardArgs | Where-Object { $_ -ne '--bypass' }) +} +if ($ForwardArgs -contains '--skip-setup') { + $y = $true + $ForwardArgs = @($ForwardArgs | Where-Object { $_ -ne '--skip-setup' }) +} +if ($ForwardArgs -contains '--quiet') { + $q = $true + $ForwardArgs = @($ForwardArgs | Where-Object { $_ -ne '--quiet' }) +} +# --user NAME and --user=NAME take a value; pull them (and the value) out by hand. +$remainingArgs = @() +for ($i = 0; $i -lt $ForwardArgs.Count; $i++) { + $arg = $ForwardArgs[$i] + if ($arg -eq '--user') { + if ($i + 1 -lt $ForwardArgs.Count) { $u = $ForwardArgs[$i + 1]; $i++ } + continue + } + if ($arg -like '--user=*') { + $u = $arg.Substring('--user='.Length) + continue + } + $remainingArgs += $arg +} +$ForwardArgs = @($remainingArgs) + +# Optional ntfy username fragment: empty unless -u/--user was given. +$ntfyUser = if ([string]::IsNullOrWhiteSpace($u)) { '' } else { " by $u" } + +# Fail immediately on PowerShell (cmdlet) errors so setup issues do not get masked. +$ErrorActionPreference = 'Stop' + +# Run a native command with stderr-as-error suppressed. Tools like uv and julia +# write normal progress to stderr; when that stderr is merged into the pipeline +# (e.g. a caller wraps this script with 2>&1, or a CI/host captures combined +# output), Windows PowerShell 5.1 turns each stderr line into a terminating +# NativeCommandError under $ErrorActionPreference='Stop' -- aborting the script +# even though the command actually succeeded (exit code 0). We relax the +# preference only around the native call; real failures are still detected by +# the caller via $LASTEXITCODE. +function Invoke-Native { + param( + [Parameter(Mandatory = $true)] + [scriptblock]$Action + ) + + $previousPreference = $ErrorActionPreference + $ErrorActionPreference = 'Continue' + try { + & $Action + } finally { + $ErrorActionPreference = $previousPreference + } +} + +# Run a named step, print progress, and throw on non-zero process exit code. +function Invoke-Step { + param( + [Parameter(Mandatory = $true)] + [scriptblock]$Action, + [Parameter(Mandatory = $true)] + [string]$Description + ) + + Write-Host "[run] $Description" + Invoke-Native $Action + if ($LASTEXITCODE -ne 0) { + throw "Step failed: $Description" + } +} + +# Script is located at repository root, so use script directory as repo root. +$repoRoot = (Resolve-Path $PSScriptRoot).Path + +Write-Host "Using repository root: $repoRoot" + +# Step 1: Verify GAMS is available on PATH, check license status, and print version. +$gamsCmd = Get-Command gams -ErrorAction SilentlyContinue +if (-not $gamsCmd) { + throw 'GAMS executable was not found on PATH. Install GAMS and add it to PATH before running ReEDS.' +} + +$gamsVersionOutput = (Invoke-Native { & gams 2>&1 | Out-String }).Trim() +if ($LASTEXITCODE -ne 0) { + throw "GAMS command failed while checking version. Output:`n$gamsVersionOutput" +} + +$gamsVersion = $null +if ($gamsVersionOutput -match '(?im)\bGAMS\b[^0-9]*([0-9]+(?:\.[0-9]+)+)') { + $gamsVersion = $matches[1] +} + +# Check for the standard GAMS success message that confirms installed license validity. +$gamsLicenseValid = ($gamsVersionOutput -match '(?im)The installed license is valid\.') +if (-not $gamsLicenseValid) { + Write-Warning "GAMS is on PATH, but license validity was not confirmed. Output:`n$gamsVersionOutput" +} + +if ($gamsVersion) { + if ($gamsLicenseValid) { + Write-Host "[ok] GAMS detected on PATH, license valid. Version: $gamsVersion" + } else { + Write-Warning "GAMS detected on PATH. License validity could not be confirmed. Version: $gamsVersion" + } +} else { + $gamsVersionFirstLine = ($gamsVersionOutput -split "`r?`n")[0] + if ($gamsLicenseValid) { + Write-Warning "GAMS detected on PATH with valid license, but version could not be parsed. Output: $gamsVersionFirstLine" + } else { + Write-Warning "GAMS detected on PATH, but license validity and version parsing were not confirmed. Output: $gamsVersionFirstLine" + } +} + +# Step 2: Verify Julia is available on PATH and exactly version 1.12.1. +$expectedJuliaVersion = '1.12.1' +$juliaCmd = Get-Command julia -ErrorAction SilentlyContinue +if (-not $juliaCmd) { + throw 'Julia executable was not found on PATH. Install Julia 1.12.1 and add it to PATH before running ReEDS.' +} + +$juliaVersionOutput = (Invoke-Native { & julia --version 2>&1 | Out-String }).Trim() +if ($LASTEXITCODE -ne 0) { + throw "Julia command failed while checking version. Output:`n$juliaVersionOutput" +} + +if (-not ($juliaVersionOutput -match '(?i)julia version\s+([0-9]+(?:\.[0-9]+){2})')) { + throw "Unable to parse Julia version from output: $juliaVersionOutput" +} + +$juliaVersion = $matches[1] +if ($juliaVersion -ne $expectedJuliaVersion) { + throw "Julia version $juliaVersion detected, but ReEDS expects $expectedJuliaVersion." +} + +Write-Host "[ok] Julia detected on PATH. Version: $juliaVersion" + +# Step 3: Set expected ReEDS env vars in the current shell session. +# These values persist for this shell after script completion. + +# Use the expected top-level virtual environment path. +# On a fresh clone this folder may not exist yet; `uv sync` below will create it. +$venvPath = Join-Path $repoRoot '.venv' +$env:CONDA_DEFAULT_ENV = 'reeds2' +$env:CONDA_PREFIX = $venvPath +Write-Host "[ok] Set CONDA_DEFAULT_ENV=$($env:CONDA_DEFAULT_ENV)" +Write-Host "[ok] Set CONDA_PREFIX=$($env:CONDA_PREFIX)" + +# Step 4: Check whether this repo is pinned to Python 3.11 via .python-version. +$pythonVersionFile = Join-Path $repoRoot '.python-version' +$hasPinned311 = $false +$pinnedPython = $null +if (Test-Path $pythonVersionFile) { + $pinnedPython = (Get-Content $pythonVersionFile -TotalCount 1).Trim() + if ($pinnedPython -match '^3\.11(\.|$)') { + $hasPinned311 = $true + } +} + +# If not already pinned to 3.11, pin it now. +if (-not $hasPinned311) { + if ([string]::IsNullOrWhiteSpace($pinnedPython)) { + Write-Warning 'Python was not already pinned to 3.11 (no .python-version pin found). Pinning now.' + } else { + Write-Warning "Python was pinned to '$pinnedPython' instead of 3.11. Re-pinning now." + } + Invoke-Step -Description 'uv python pin 3.11' -Action { + Set-Location $repoRoot + uv python pin 3.11 + } +} else { + Write-Host '[ok] Python is already pinned to 3.11 in .python-version.' +} + +# Step 5: Run uv sync unless bypass mode is enabled. +if ($y) { + Write-Warning 'Bypass mode enabled: skipping uv sync --extra dev and julia --project=. instantiate.jl.' +} else { + # This is safe and ensures Python deps match lock/project files. + Invoke-Step -Description 'uv sync --extra dev' -Action { + # Run from repo root so uv uses the intended project files. + Set-Location $repoRoot + uv sync --extra dev + } + + # Step 6: Instantiate Julia deps only when needed. A fast, offline instantiate + # (no registry update) both checks and cheaply self-heals the environment. If + # it can't satisfy the project from the local registry cache (e.g. the Manifest + # changed to a version not cached, or a fresh Julia depot), fall back to the + # full instantiate.jl, which updates the registry. Every Project.toml dependency + # (including Random123, PRAS, TimeZones) is covered by instantiate, so the fast + # path loses nothing when the environment is already current. + Write-Host '[run] checking whether Julia dependencies need instantiation' + Set-Location $repoRoot + Invoke-Native { julia --project=. -e "using Pkg; try; Pkg.instantiate(; update_registry=false); exit(0); catch; exit(1); end" } + if ($LASTEXITCODE -eq 0) { + Write-Host '[ok] Julia dependencies already instantiated (skipping full instantiate.jl).' + } else { + Write-Warning 'Julia dependencies changed or missing; running full instantiate.jl (updates registry).' + Invoke-Step -Description 'julia --project=. instantiate.jl' -Action { + Set-Location $repoRoot + julia --project=. instantiate.jl + } + } +} + +# Step 7: Warn (non-fatal) if environment.yml and pyproject.toml have drifted +# beyond the known-accepted exceptions. This always runs -- it only reads two +# text files -- so it is not gated by bypass mode. It must never abort the +# bootstrap, so a non-zero result becomes a warning rather than a throw. +Write-Host '[run] CEPM/check_env_sync.py (environment.yml vs pyproject.toml)' +Set-Location $repoRoot +Invoke-Native { uv run python CEPM/check_env_sync.py } +if ($LASTEXITCODE -ne 0) { + Write-Warning 'environment.yml and pyproject.toml have drifted (see output above). Update both files, or adjust the allowlist in CEPM/check_env_sync.py. Continuing.' +} else { + Write-Host '[ok] environment.yml and pyproject.toml are aligned (within known exceptions).' +} + +Write-Host 'Bootstrap complete. Starting ReEDS runreeds.py with forwarded arguments...' + +if (-not $q) { + try { + Invoke-RestMethod -Method Post -Uri "https://ntfy.sh/rmi-cepm-run-batch-finished" -TimeoutSec 5 ` + -Body "ReEDS run batch started on $(hostname)$ntfyUser at $(Get-Date -Format 'yyyy-MM-dd HH:mm:ss')" | Out-Null + } catch {} +} + +# Step 8: Start ReEDS with any arguments passed to this bootstrap script. +Write-Host '[run] uv run python runreeds.py ...' +Set-Location $repoRoot +Invoke-Native { uv run python runreeds.py @ForwardArgs } + +# Send a NTFY message on failure and exit if runreeds fails. +if ($LASTEXITCODE -ne 0) { + if (-not $q) { + try { + Invoke-RestMethod -Method Post -Uri "https://ntfy.sh/rmi-cepm-run-batch-finished" -TimeoutSec 5 ` + -Body "ReEDS run batch failed to finish on $(hostname)$ntfyUser at $(Get-Date -Format 'yyyy-MM-dd HH:mm:ss')" | Out-Null + } catch {} + } + throw 'runreeds.py failed.' +} + +# Step 9: Notify ntfy.sh that the run has finished. Useful for long-running runs. +# Best-effort only -- wrapped so a failed or offline notification never affects +# the run outcome; skipped entirely with -q/--quiet. +if (-not $q) { + try { + Invoke-RestMethod -Method Post -Uri "https://ntfy.sh/rmi-cepm-run-batch-finished" -TimeoutSec 5 ` + -Body "ReEDS run batch finished on $(hostname)$ntfyUser at $(Get-Date -Format 'yyyy-MM-dd HH:mm:ss')" | Out-Null + } catch {} +} + + diff --git a/uv.lock b/uv.lock new file mode 100644 index 000000000..7f775e22a --- /dev/null +++ b/uv.lock @@ -0,0 +1,2846 @@ +version = 1 +revision = 3 +requires-python = "==3.11.*" + +[[package]] +name = "adlfs" +version = "2024.12.0" +source = { registry = "https://pypi.org/simple" } +dependencies = [ + { name = "aiohttp" }, + { name = "azure-core" }, + { name = "azure-datalake-store" }, + { name = "azure-identity" }, + { name = "azure-storage-blob" }, + { name = "fsspec" }, +] +sdist = { url = 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