From c85d860eb2e755776699ebf3872885487b41d663 Mon Sep 17 00:00:00 2001 From: Deymos01 Date: Mon, 28 Jul 2025 20:36:40 +0300 Subject: [PATCH 1/3] feat: implementation of user and experiment models, and migrations --- .env.example | 5 + alembic.ini | 147 + alembic/env.py | 0 migrations/env.py | 85 + migrations/script.py.mako | 28 + ...8c1_create_users_and_experiments_tables.py | 49 + poetry.lock | 2785 +++++++++++++++++ pyproject.toml | 1 + pysatl_knowledge/core/config.py | 23 + pysatl_knowledge/core/database.py | 21 + pysatl_knowledge/models/__init__.py | 2 + pysatl_knowledge/models/base.py | 4 + pysatl_knowledge/models/experiment.py | 25 + pysatl_knowledge/models/user.py | 13 + pysatl_knowledge/repositories/__init__.py | 2 + .../repositories/experiment_repository.py | 100 + .../repositories/user_repository.py | 56 + 17 files changed, 3346 insertions(+) create mode 100644 .env.example create mode 100644 alembic.ini delete mode 100644 alembic/env.py create mode 100644 migrations/env.py create mode 100644 migrations/script.py.mako create mode 100644 migrations/versions/e6ae580b38c1_create_users_and_experiments_tables.py create mode 100644 poetry.lock create mode 100644 pysatl_knowledge/core/config.py create mode 100644 pysatl_knowledge/core/database.py create mode 100644 pysatl_knowledge/models/base.py create mode 100644 pysatl_knowledge/models/experiment.py create mode 100644 pysatl_knowledge/models/user.py create mode 100644 pysatl_knowledge/repositories/experiment_repository.py create mode 100644 pysatl_knowledge/repositories/user_repository.py diff --git a/.env.example b/.env.example new file mode 100644 index 0000000..68f4e3d --- /dev/null +++ b/.env.example @@ -0,0 +1,5 @@ +DB_HOST=localhost +DB_PORT=5432 +DB_NAME=db_name +DB_USER=postgres +DB_PASS=postgres \ No newline at end of file diff --git a/alembic.ini b/alembic.ini new file mode 100644 index 0000000..035f57b --- /dev/null +++ b/alembic.ini @@ -0,0 +1,147 @@ +# A generic, single database configuration. + +[alembic] +# path to migration scripts. +# this is typically a path given in POSIX (e.g. forward slashes) +# format, relative to the token %(here)s which refers to the location of this +# ini file +script_location = %(here)s/migrations + +# template used to generate migration file names; The default value is %%(rev)s_%%(slug)s +# Uncomment the line below if you want the files to be prepended with date and time +# see https://alembic.sqlalchemy.org/en/latest/tutorial.html#editing-the-ini-file +# for all available tokens +# file_template = %%(year)d_%%(month).2d_%%(day).2d_%%(hour).2d%%(minute).2d-%%(rev)s_%%(slug)s + +# sys.path path, will be prepended to sys.path if present. +# defaults to the current working directory. for multiple paths, the path separator +# is defined by "path_separator" below. +prepend_sys_path = . + + +# timezone to use when rendering the date within the migration file +# as well as the filename. +# If specified, requires the python>=3.9 or backports.zoneinfo library and tzdata library. +# Any required deps can installed by adding `alembic[tz]` to the pip requirements +# string value is passed to ZoneInfo() +# leave blank for localtime +# timezone = + +# max length of characters to apply to the "slug" field +# truncate_slug_length = 40 + +# set to 'true' to run the environment during +# the 'revision' command, regardless of autogenerate +# revision_environment = false + +# set to 'true' to allow .pyc and .pyo files without +# a source .py file to be detected as revisions in the +# versions/ directory +# sourceless = false + +# version location specification; This defaults +# to /versions. When using multiple version +# directories, initial revisions must be specified with --version-path. +# The path separator used here should be the separator specified by "path_separator" +# below. +# version_locations = %(here)s/bar:%(here)s/bat:%(here)s/alembic/versions + +# path_separator; This indicates what character is used to split lists of file +# paths, including version_locations and prepend_sys_path within configparser +# files such as alembic.ini. +# The default rendered in new alembic.ini files is "os", which uses os.pathsep +# to provide os-dependent path splitting. +# +# Note that in order to support legacy alembic.ini files, this default does NOT +# take place if path_separator is not present in alembic.ini. If this +# option is omitted entirely, fallback logic is as follows: +# +# 1. Parsing of the version_locations option falls back to using the legacy +# "version_path_separator" key, which if absent then falls back to the legacy +# behavior of splitting on spaces and/or commas. +# 2. Parsing of the prepend_sys_path option falls back to the legacy +# behavior of splitting on spaces, commas, or colons. +# +# Valid values for path_separator are: +# +# path_separator = : +# path_separator = ; +# path_separator = space +# path_separator = newline +# +# Use os.pathsep. Default configuration used for new projects. +path_separator = os + +# set to 'true' to search source files recursively +# in each "version_locations" directory +# new in Alembic version 1.10 +# recursive_version_locations = false + +# the output encoding used when revision files +# are written from script.py.mako +# output_encoding = utf-8 + +# database URL. This is consumed by the user-maintained env.py script only. +# other means of configuring database URLs may be customized within the env.py +# file. +sqlalchemy.url = driver://user:pass@localhost/dbname + + +[post_write_hooks] +# post_write_hooks defines scripts or Python functions that are run +# on newly generated revision scripts. See the documentation for further +# detail and examples + +# format using "black" - use the console_scripts runner, against the "black" entrypoint +# hooks = black +# black.type = console_scripts +# black.entrypoint = black +# black.options = -l 79 REVISION_SCRIPT_FILENAME + +# lint with attempts to fix using "ruff" - use the module runner, against the "ruff" module +# hooks = ruff +# ruff.type = module +# ruff.module = ruff +# ruff.options = check --fix REVISION_SCRIPT_FILENAME + +# Alternatively, use the exec runner to execute a binary found on your PATH +# hooks = ruff +# ruff.type = exec +# ruff.executable = ruff +# ruff.options = check --fix REVISION_SCRIPT_FILENAME + +# Logging configuration. This is also consumed by the user-maintained +# env.py script only. +[loggers] +keys = root,sqlalchemy,alembic + +[handlers] +keys = console + +[formatters] +keys = generic + +[logger_root] +level = WARNING +handlers = console +qualname = + +[logger_sqlalchemy] +level = WARNING +handlers = +qualname = sqlalchemy.engine + +[logger_alembic] +level = INFO +handlers = +qualname = alembic + +[handler_console] +class = StreamHandler +args = (sys.stderr,) +level = NOTSET +formatter = generic + +[formatter_generic] +format = %(levelname)-5.5s [%(name)s] %(message)s +datefmt = %H:%M:%S diff --git a/alembic/env.py b/alembic/env.py deleted file mode 100644 index e69de29..0000000 diff --git a/migrations/env.py b/migrations/env.py new file mode 100644 index 0000000..e2f6459 --- /dev/null +++ b/migrations/env.py @@ -0,0 +1,85 @@ +from logging.config import fileConfig + +from sqlalchemy import engine_from_config +from sqlalchemy import pool + +from alembic import context + +from pysatl_knowledge.core.config import settings +from pysatl_knowledge import models # noqa +from pysatl_knowledge.models.base import Base + +# this is the Alembic Config object, which provides +# access to the values within the .ini file in use. +config = context.config + +# Interpret the config file for Python logging. +# This line sets up loggers basically. +if config.config_file_name is not None: + fileConfig(config.config_file_name) + +config.set_main_option("sqlalchemy.url", settings.DATABASE_URL + "?async_fallback=True") + +# add your model's MetaData object here +# for 'autogenerate' support +# from myapp import mymodel +# target_metadata = mymodel.Base.metadata +target_metadata = Base.metadata + + +# other values from the config, defined by the needs of env.py, +# can be acquired: +# my_important_option = config.get_main_option("my_important_option") +# ... etc. + + +def run_migrations_offline() -> None: + """Run migrations in 'offline' mode. + + This configures the context with just a URL + and not an Engine, though an Engine is acceptable + here as well. By skipping the Engine creation + we don't even need a DBAPI to be available. + + Calls to context.execute() here emit the given string to the + script output. + + """ + url = config.get_main_option("sqlalchemy.url") + context.configure( + url=url, + target_metadata=target_metadata, + literal_binds=True, + dialect_opts={"paramstyle": "named"}, + ) + + with context.begin_transaction(): + context.run_migrations() + + +def run_migrations_online() -> None: + """Run migrations in 'online' mode. + + In this scenario we need to create an Engine + and associate a connection with the context. + + """ + connectable = engine_from_config( + config.get_section(config.config_ini_section, {}), + prefix="sqlalchemy.", + poolclass=pool.NullPool, + ) + + with connectable.connect() as connection: + context.configure( + connection=connection, target_metadata=target_metadata + ) + + with context.begin_transaction(): + context.run_migrations() + + +if context.is_offline_mode(): + run_migrations_offline() +else: + run_migrations_online() diff --git a/migrations/script.py.mako b/migrations/script.py.mako new file mode 100644 index 0000000..1101630 --- /dev/null +++ b/migrations/script.py.mako @@ -0,0 +1,28 @@ +"""${message} + +Revision ID: ${up_revision} +Revises: ${down_revision | comma,n} +Create Date: ${create_date} + +""" +from typing import Sequence, Union + +from alembic import op +import sqlalchemy as sa +${imports if imports else ""} + +# revision identifiers, used by Alembic. +revision: str = ${repr(up_revision)} +down_revision: Union[str, Sequence[str], None] = ${repr(down_revision)} +branch_labels: Union[str, Sequence[str], None] = ${repr(branch_labels)} +depends_on: Union[str, Sequence[str], None] = ${repr(depends_on)} + + +def upgrade() -> None: + """Upgrade schema.""" + ${upgrades if upgrades else "pass"} + + +def downgrade() -> None: + """Downgrade schema.""" + ${downgrades if downgrades else "pass"} diff --git a/migrations/versions/e6ae580b38c1_create_users_and_experiments_tables.py b/migrations/versions/e6ae580b38c1_create_users_and_experiments_tables.py new file mode 100644 index 0000000..0e67695 --- /dev/null +++ b/migrations/versions/e6ae580b38c1_create_users_and_experiments_tables.py @@ -0,0 +1,49 @@ +"""Create users and experiments tables + +Revision ID: e6ae580b38c1 +Revises: +Create Date: 2025-07-28 19:27:05.985207 + +""" +from typing import Sequence, Union + +from alembic import op +import sqlalchemy as sa + + +# revision identifiers, used by Alembic. +revision: str = 'e6ae580b38c1' +down_revision: Union[str, Sequence[str], None] = None +branch_labels: Union[str, Sequence[str], None] = None +depends_on: Union[str, Sequence[str], None] = None + + +def upgrade() -> None: + """Upgrade schema.""" + # ### commands auto generated by Alembic - please adjust! ### + op.create_table('experiments', + sa.Column('id', sa.Integer(), nullable=False), + sa.Column('criterion_code', sa.String(), nullable=False), + sa.Column('sample_size', sa.Integer(), nullable=False), + sa.Column('iterations', sa.Integer(), nullable=False), + sa.Column('result', sa.Float(), nullable=False), + sa.Column('status', sa.String(), nullable=False), + sa.PrimaryKeyConstraint('id', 'criterion_code', 'sample_size', 'iterations') + ) + op.create_table('users', + sa.Column('id', sa.Integer(), nullable=False), + sa.Column('username', sa.String(), nullable=False), + sa.Column('password_hash', sa.String(), nullable=False), + sa.Column('role', sa.String(), nullable=False), + sa.PrimaryKeyConstraint('id'), + sa.UniqueConstraint('username') + ) + # ### end Alembic commands ### + + +def downgrade() -> None: + """Downgrade schema.""" + # ### commands auto generated by Alembic - please adjust! ### + op.drop_table('users') + op.drop_table('experiments') + # ### end Alembic commands ### diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..df298ab --- /dev/null +++ b/poetry.lock @@ -0,0 +1,2785 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@@ ruff = "0.7.4" pytest-mock = "3.14.0" pre-commit = "4.0.1" mypy = "1.15.0" +pytest-asyncio = "^1.1.0" [tool.isort] line_length = 100 diff --git a/pysatl_knowledge/core/config.py b/pysatl_knowledge/core/config.py new file mode 100644 index 0000000..47b6bcf --- /dev/null +++ b/pysatl_knowledge/core/config.py @@ -0,0 +1,23 @@ +import os.path + +from dotenv import load_dotenv +from pydantic_settings import BaseSettings, SettingsConfigDict + +load_dotenv(dotenv_path=os.path.join(os.path.dirname(__file__), '../../.env')) + + +class Settings(BaseSettings): + DB_HOST: str + DB_PORT: int + DB_NAME: str + DB_USER: str + DB_PASS: str + + @property + def DATABASE_URL(self) -> str: + return f"postgresql+asyncpg://{self.DB_USER}:{self.DB_PASS}@{self.DB_HOST}:{self.DB_PORT}/{self.DB_NAME}" + + model_config = SettingsConfigDict(env_file=".env") + + +settings = Settings() diff --git a/pysatl_knowledge/core/database.py b/pysatl_knowledge/core/database.py new file mode 100644 index 0000000..25db4e6 --- /dev/null +++ b/pysatl_knowledge/core/database.py @@ -0,0 +1,21 @@ +from requests import session +from sqlalchemy.ext.asyncio import create_async_engine, AsyncSession +from sqlalchemy.orm import sessionmaker + +from pysatl_knowledge.core.config import settings + +engine = create_async_engine( + url=settings.DATABASE_URL, + echo=True, +) + +async_session = sessionmaker( + bind=engine, + class_=AsyncSession, + expire_on_commit=False, +) + + +async def get_session(): + async with AsyncSession() as s: + yield s diff --git a/pysatl_knowledge/models/__init__.py b/pysatl_knowledge/models/__init__.py index e69de29..d8975fb 100644 --- a/pysatl_knowledge/models/__init__.py +++ b/pysatl_knowledge/models/__init__.py @@ -0,0 +1,2 @@ +from .user import User +from .experiment import Experiment \ No newline at end of file diff --git a/pysatl_knowledge/models/base.py b/pysatl_knowledge/models/base.py new file mode 100644 index 0000000..2278416 --- /dev/null +++ b/pysatl_knowledge/models/base.py @@ -0,0 +1,4 @@ +from sqlalchemy.orm import DeclarativeBase + +class Base(DeclarativeBase): + pass \ No newline at end of file diff --git a/pysatl_knowledge/models/experiment.py b/pysatl_knowledge/models/experiment.py new file mode 100644 index 0000000..10a6cd6 --- /dev/null +++ b/pysatl_knowledge/models/experiment.py @@ -0,0 +1,25 @@ +from sqlalchemy import UniqueConstraint +from sqlalchemy.orm import Mapped, mapped_column + +from pysatl_knowledge.models.base import Base + + +class Experiment(Base): + """ORM model for experiments in the knowledge base.""" + + __tablename__ = 'experiments' + + id: Mapped[int] = mapped_column(primary_key=True, autoincrement=True) + criterion_code: Mapped[str] + sample_size: Mapped[int] + iterations: Mapped[int] + result: Mapped[float] + status: Mapped[str] = mapped_column(default="pending") + + __table_args__ = ( + UniqueConstraint( + "criterion_code", + "sample_size", + "iterations", + ), + ) diff --git a/pysatl_knowledge/models/user.py b/pysatl_knowledge/models/user.py new file mode 100644 index 0000000..b61a986 --- /dev/null +++ b/pysatl_knowledge/models/user.py @@ -0,0 +1,13 @@ +from sqlalchemy.orm import Mapped, mapped_column +from pysatl_knowledge.models.base import Base + + +class User(Base): + """ORM model for users in the knowledge base.""" + + __tablename__ = 'users' + + id: Mapped[int] = mapped_column(primary_key=True, autoincrement=True) + username: Mapped[str] = mapped_column(unique=True, nullable=False) + password_hash: Mapped[str] = mapped_column(nullable=False) + role: Mapped[str] = mapped_column(nullable=False) diff --git a/pysatl_knowledge/repositories/__init__.py b/pysatl_knowledge/repositories/__init__.py index e69de29..739f387 100644 --- a/pysatl_knowledge/repositories/__init__.py +++ b/pysatl_knowledge/repositories/__init__.py @@ -0,0 +1,2 @@ +from .user_repository import UserRepository +from .experiment_repository import ExperimentRepository \ No newline at end of file diff --git a/pysatl_knowledge/repositories/experiment_repository.py b/pysatl_knowledge/repositories/experiment_repository.py new file mode 100644 index 0000000..d67183f --- /dev/null +++ b/pysatl_knowledge/repositories/experiment_repository.py @@ -0,0 +1,100 @@ +from typing import List + +from sqlalchemy.future import select + +from pysatl_knowledge.models import Experiment +from pysatl_knowledge.core.database import async_session + + +class ExperimentRepository: + async def find_by_params(self, criterion_code: str, sample_size: int, iterations: int) -> List[Experiment]: + """ + Find experiments by criterion code, sample size, and iterations. + :param criterion_code: The code of the criterion to filter experiments. + :param sample_size: The sample size of the experiments to filter. + :param iterations: The number of iterations of the experiments to filter. + :return: A list of Experiment objects that match the given parameters. + """ + async with async_session() as session: + result = await session.execute( + select(Experiment).where( + Experiment.criterion_code == criterion_code, + Experiment.sample_size == sample_size, + Experiment.iterations == iterations, + ) + ) + return result.scalars().all() + + async def find_by_id(self, id: int) -> Experiment | None: + """ + Find an experiment by its ID. + :param id: The ID of the experiment to find. + :return: An Experiment object if found, otherwise None. + """ + async with async_session() as session: + result = await session.execute( + select(Experiment).where(Experiment.id == id) + ) + return result.scalar_one_or_none() + + async def get_status(self, criterion_code: str, sample_size: int, iterations: int) -> str | None: + """ + Get the status of an experiment based on its criterion code, sample size, and iterations. + :param criterion_code: The code of the criterion to filter experiments. + :param sample_size: The sample size of the experiments to filter. + :param iterations: The number of iterations of the experiments to filter. + :return: The status of the experiment if found, otherwise None. + """ + async with async_session() as session: + result = await session.execute( + select(Experiment.status).where( + Experiment.criterion_code == criterion_code, + Experiment.sample_size == sample_size, + Experiment.iterations == iterations, + ) + ) + return result.scalar_one_or_none() + + async def create(self, experiment: Experiment) -> Experiment: + """ + Create a new experiment in the database. + :param experiment: The Experiment object to create. + :return: The created Experiment object with its ID populated. + """ + async with async_session() as session: + session.add(experiment) + await session.commit() + await session.refresh(experiment) + return experiment + + async def update(self, experiment: Experiment) -> Experiment: + """ + Update an existing experiment in the database. + :param experiment: The Experiment object to update. + :return: The updated Experiment object. + """ + async with async_session() as session: + session.add(experiment) + await session.commit() + await session.refresh(experiment) + return experiment + + async def update_status(self, experiment: Experiment, new_status: str) -> Experiment: + """ + Update the status of an existing experiment. + :param experiment: The Experiment object to update. + :param new_status: The new status to set for the experiment. + :return: The updated Experiment object with the new status. + """ + experiment.status = new_status + return await self.update(experiment) + + async def delete(self, experiment: Experiment) -> None: + """ + Delete an experiment from the database. + :param experiment: The Experiment object to delete. + :return: None + """ + async with async_session() as session: + await session.delete(experiment) + await session.commit() diff --git a/pysatl_knowledge/repositories/user_repository.py b/pysatl_knowledge/repositories/user_repository.py new file mode 100644 index 0000000..7b08b35 --- /dev/null +++ b/pysatl_knowledge/repositories/user_repository.py @@ -0,0 +1,56 @@ +from sqlalchemy.future import select + +from pysatl_knowledge.models import User +from pysatl_knowledge.core.database import async_session + +class UserRepository: + async def find_by_username(self, username: str) -> User | None: + """ + Find a user by their username. + :param username: The username of the user to find. + :return: A User object if found, otherwise None. + """ + async with async_session() as session: + result = await session.execute( + select(User).where(User.username == username) + ) + return result.scalar_one_or_none() + + async def create(self, user: User) -> User: + """ + Create a new user in the database. + :param user: The User object to create. + :return: The created User object with its ID populated. + """ + async with async_session() as session: + session.add(user) + await session.commit() + await session.refresh(user) + return user + + async def update(self, user: User) -> User: + """ + Update an existing user in the database. + :param user: The User object to update. + :return: The updated User object. + """ + async with async_session() as session: + await session.merge(user) + await session.commit() + await session.refresh(user) + return user + + async def delete_by_id(self, user_id: int) -> bool: + """ + Delete a user by their ID. + :param user_id: The ID of the user to delete. + :return: True if the user was deleted, otherwise False. + """ + async with async_session() as session: + result = await session.execute(select(User).where(User.id == user_id)) + user = result.scalar_one_or_none() + if user is None: + return False + await session.delete(user) + await session.commit() + return True From 5db39dc6f5ca10867bf58a1aaffc3016ceca1d5b Mon Sep 17 00:00:00 2001 From: Deymos01 Date: Mon, 28 Jul 2025 20:59:49 +0300 Subject: [PATCH 2/3] fix migration --- ...883b84c3_create_users_and_experiments_tables.py} | 13 +++++++------ 1 file changed, 7 insertions(+), 6 deletions(-) rename migrations/versions/{e6ae580b38c1_create_users_and_experiments_tables.py => 9a61883b84c3_create_users_and_experiments_tables.py} (79%) diff --git a/migrations/versions/e6ae580b38c1_create_users_and_experiments_tables.py b/migrations/versions/9a61883b84c3_create_users_and_experiments_tables.py similarity index 79% rename from migrations/versions/e6ae580b38c1_create_users_and_experiments_tables.py rename to migrations/versions/9a61883b84c3_create_users_and_experiments_tables.py index 0e67695..1d91969 100644 --- a/migrations/versions/e6ae580b38c1_create_users_and_experiments_tables.py +++ b/migrations/versions/9a61883b84c3_create_users_and_experiments_tables.py @@ -1,8 +1,8 @@ """Create users and experiments tables -Revision ID: e6ae580b38c1 +Revision ID: 9a61883b84c3 Revises: -Create Date: 2025-07-28 19:27:05.985207 +Create Date: 2025-07-28 20:58:42.261092 """ from typing import Sequence, Union @@ -12,7 +12,7 @@ # revision identifiers, used by Alembic. -revision: str = 'e6ae580b38c1' +revision: str = '9a61883b84c3' down_revision: Union[str, Sequence[str], None] = None branch_labels: Union[str, Sequence[str], None] = None depends_on: Union[str, Sequence[str], None] = None @@ -22,16 +22,17 @@ def upgrade() -> None: """Upgrade schema.""" # ### commands auto generated by Alembic - please adjust! ### op.create_table('experiments', - sa.Column('id', sa.Integer(), nullable=False), + sa.Column('id', sa.Integer(), autoincrement=True, nullable=False), sa.Column('criterion_code', sa.String(), nullable=False), sa.Column('sample_size', sa.Integer(), nullable=False), sa.Column('iterations', sa.Integer(), nullable=False), sa.Column('result', sa.Float(), nullable=False), sa.Column('status', sa.String(), nullable=False), - sa.PrimaryKeyConstraint('id', 'criterion_code', 'sample_size', 'iterations') + sa.PrimaryKeyConstraint('id'), + sa.UniqueConstraint('criterion_code', 'sample_size', 'iterations') ) op.create_table('users', - sa.Column('id', sa.Integer(), nullable=False), + sa.Column('id', sa.Integer(), autoincrement=True, nullable=False), sa.Column('username', sa.String(), nullable=False), sa.Column('password_hash', sa.String(), nullable=False), sa.Column('role', sa.String(), nullable=False), From 056159296a202e7c5b4e66dc11cb56047790522d Mon Sep 17 00:00:00 2001 From: AlexandrKudrya Date: Tue, 29 Jul 2025 05:47:55 +0300 Subject: [PATCH 3/3] fix: pre-commit check --- .env.example | 2 +- migrations/env.py | 11 ++++------- pyproject.toml | 5 ++++- pysatl_knowledge/core/config.py | 14 ++++++++------ pysatl_knowledge/core/database.py | 14 +++++++------- pysatl_knowledge/models/__init__.py | 4 ++-- pysatl_knowledge/models/base.py | 3 ++- pysatl_knowledge/models/experiment.py | 2 +- pysatl_knowledge/models/user.py | 3 ++- pysatl_knowledge/repositories/__init__.py | 4 ++-- .../repositories/experiment_repository.py | 18 +++++++++--------- .../repositories/user_repository.py | 7 +++---- 12 files changed, 45 insertions(+), 42 deletions(-) diff --git a/.env.example b/.env.example index 68f4e3d..4b31b67 100644 --- a/.env.example +++ b/.env.example @@ -2,4 +2,4 @@ DB_HOST=localhost DB_PORT=5432 DB_NAME=db_name DB_USER=postgres -DB_PASS=postgres \ No newline at end of file +DB_PASS=postgres diff --git a/migrations/env.py b/migrations/env.py index e2f6459..30e7f85 100644 --- a/migrations/env.py +++ b/migrations/env.py @@ -1,14 +1,13 @@ from logging.config import fileConfig -from sqlalchemy import engine_from_config -from sqlalchemy import pool - from alembic import context +from sqlalchemy import engine_from_config, pool -from pysatl_knowledge.core.config import settings from pysatl_knowledge import models # noqa +from pysatl_knowledge.core.config import settings from pysatl_knowledge.models.base import Base + # this is the Alembic Config object, which provides # access to the values within the .ini file in use. config = context.config @@ -71,9 +70,7 @@ def run_migrations_online() -> None: ) with connectable.connect() as connection: - context.configure( - connection=connection, target_metadata=target_metadata - ) + context.configure(connection=connection, target_metadata=target_metadata) with context.begin_transaction(): context.run_migrations() diff --git a/pyproject.toml b/pyproject.toml index d978db8..338d05c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,7 @@ authors = [ ] license = {text = "MIT"} readme = "README.md" -requires-python = ">=3.9,<3.13" +requires-python = ">=3.10,<3.13" dependencies = [ "fastapi>=0.111.0", "uvicorn[standard]>=0.30.0", @@ -63,6 +63,9 @@ skip_glob = ["**/.env*", "**/env/*", "**/.venv/*", "**/docs/*", "**/user_data/*" [tool.ruff] line-length = 100 extend-exclude = [".env", ".venv"] +exclude = [ + "migrations/versions", +] [tool.ruff.lint] extend-select = [ diff --git a/pysatl_knowledge/core/config.py b/pysatl_knowledge/core/config.py index 47b6bcf..d9549ca 100644 --- a/pysatl_knowledge/core/config.py +++ b/pysatl_knowledge/core/config.py @@ -1,10 +1,5 @@ -import os.path - -from dotenv import load_dotenv from pydantic_settings import BaseSettings, SettingsConfigDict -load_dotenv(dotenv_path=os.path.join(os.path.dirname(__file__), '../../.env')) - class Settings(BaseSettings): DB_HOST: str @@ -15,7 +10,14 @@ class Settings(BaseSettings): @property def DATABASE_URL(self) -> str: - return f"postgresql+asyncpg://{self.DB_USER}:{self.DB_PASS}@{self.DB_HOST}:{self.DB_PORT}/{self.DB_NAME}" + return ( + f"postgresql+asyncpg://" + f"{self.DB_USER}:" + f"{self.DB_PASS}@" + f"{self.DB_HOST}:" + f"{self.DB_PORT}/" + f"{self.DB_NAME}" + ) model_config = SettingsConfigDict(env_file=".env") diff --git a/pysatl_knowledge/core/database.py b/pysatl_knowledge/core/database.py index 25db4e6..2f980a2 100644 --- a/pysatl_knowledge/core/database.py +++ b/pysatl_knowledge/core/database.py @@ -1,21 +1,21 @@ -from requests import session -from sqlalchemy.ext.asyncio import create_async_engine, AsyncSession +from sqlalchemy.ext.asyncio import AsyncSession, create_async_engine from sqlalchemy.orm import sessionmaker from pysatl_knowledge.core.config import settings + engine = create_async_engine( url=settings.DATABASE_URL, echo=True, ) -async_session = sessionmaker( - bind=engine, - class_=AsyncSession, +async_session = sessionmaker( # type: ignore + engine, expire_on_commit=False, + class_=AsyncSession, ) async def get_session(): - async with AsyncSession() as s: - yield s + async with async_session() as session: + yield session diff --git a/pysatl_knowledge/models/__init__.py b/pysatl_knowledge/models/__init__.py index d8975fb..1592ffb 100644 --- a/pysatl_knowledge/models/__init__.py +++ b/pysatl_knowledge/models/__init__.py @@ -1,2 +1,2 @@ -from .user import User -from .experiment import Experiment \ No newline at end of file +from .experiment import Experiment # noqa: F401 +from .user import User # noqa: F401 diff --git a/pysatl_knowledge/models/base.py b/pysatl_knowledge/models/base.py index 2278416..fa2b68a 100644 --- a/pysatl_knowledge/models/base.py +++ b/pysatl_knowledge/models/base.py @@ -1,4 +1,5 @@ from sqlalchemy.orm import DeclarativeBase + class Base(DeclarativeBase): - pass \ No newline at end of file + pass diff --git a/pysatl_knowledge/models/experiment.py b/pysatl_knowledge/models/experiment.py index 10a6cd6..f205034 100644 --- a/pysatl_knowledge/models/experiment.py +++ b/pysatl_knowledge/models/experiment.py @@ -7,7 +7,7 @@ class Experiment(Base): """ORM model for experiments in the knowledge base.""" - __tablename__ = 'experiments' + __tablename__ = "experiments" id: Mapped[int] = mapped_column(primary_key=True, autoincrement=True) criterion_code: Mapped[str] diff --git a/pysatl_knowledge/models/user.py b/pysatl_knowledge/models/user.py index b61a986..2c2bc99 100644 --- a/pysatl_knowledge/models/user.py +++ b/pysatl_knowledge/models/user.py @@ -1,11 +1,12 @@ from sqlalchemy.orm import Mapped, mapped_column + from pysatl_knowledge.models.base import Base class User(Base): """ORM model for users in the knowledge base.""" - __tablename__ = 'users' + __tablename__ = "users" id: Mapped[int] = mapped_column(primary_key=True, autoincrement=True) username: Mapped[str] = mapped_column(unique=True, nullable=False) diff --git a/pysatl_knowledge/repositories/__init__.py b/pysatl_knowledge/repositories/__init__.py index 739f387..489060c 100644 --- a/pysatl_knowledge/repositories/__init__.py +++ b/pysatl_knowledge/repositories/__init__.py @@ -1,2 +1,2 @@ -from .user_repository import UserRepository -from .experiment_repository import ExperimentRepository \ No newline at end of file +from .experiment_repository import ExperimentRepository # noqa: F401 +from .user_repository import UserRepository # noqa: F401 diff --git a/pysatl_knowledge/repositories/experiment_repository.py b/pysatl_knowledge/repositories/experiment_repository.py index d67183f..4b160cb 100644 --- a/pysatl_knowledge/repositories/experiment_repository.py +++ b/pysatl_knowledge/repositories/experiment_repository.py @@ -1,13 +1,13 @@ -from typing import List - from sqlalchemy.future import select -from pysatl_knowledge.models import Experiment from pysatl_knowledge.core.database import async_session +from pysatl_knowledge.models import Experiment class ExperimentRepository: - async def find_by_params(self, criterion_code: str, sample_size: int, iterations: int) -> List[Experiment]: + async def find_by_params( + self, criterion_code: str, sample_size: int, iterations: int + ) -> list[Experiment]: """ Find experiments by criterion code, sample size, and iterations. :param criterion_code: The code of the criterion to filter experiments. @@ -25,19 +25,19 @@ async def find_by_params(self, criterion_code: str, sample_size: int, iterations ) return result.scalars().all() - async def find_by_id(self, id: int) -> Experiment | None: + async def find_by_id(self, cv_id: int) -> Experiment | None: """ Find an experiment by its ID. :param id: The ID of the experiment to find. :return: An Experiment object if found, otherwise None. """ async with async_session() as session: - result = await session.execute( - select(Experiment).where(Experiment.id == id) - ) + result = await session.execute(select(Experiment).where(Experiment.id == cv_id)) return result.scalar_one_or_none() - async def get_status(self, criterion_code: str, sample_size: int, iterations: int) -> str | None: + async def get_status( + self, criterion_code: str, sample_size: int, iterations: int + ) -> str | None: """ Get the status of an experiment based on its criterion code, sample size, and iterations. :param criterion_code: The code of the criterion to filter experiments. diff --git a/pysatl_knowledge/repositories/user_repository.py b/pysatl_knowledge/repositories/user_repository.py index 7b08b35..77878ab 100644 --- a/pysatl_knowledge/repositories/user_repository.py +++ b/pysatl_knowledge/repositories/user_repository.py @@ -1,7 +1,8 @@ from sqlalchemy.future import select -from pysatl_knowledge.models import User from pysatl_knowledge.core.database import async_session +from pysatl_knowledge.models import User + class UserRepository: async def find_by_username(self, username: str) -> User | None: @@ -11,9 +12,7 @@ async def find_by_username(self, username: str) -> User | None: :return: A User object if found, otherwise None. """ async with async_session() as session: - result = await session.execute( - select(User).where(User.username == username) - ) + result = await session.execute(select(User).where(User.username == username)) return result.scalar_one_or_none() async def create(self, user: User) -> User: