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tools_plot.py
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2486 lines (2332 loc) · 93.9 KB
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# Functions for plotting the Curves (Pablo) Last update: 2024-08-26
#-------------
# This part gathers the functions used to analyze the data (energies and [m_s,S(S+1),%S_M=1, %S_L=1])
# in order to plot them.
#-------------
import numpy as np
import matplotlib.pyplot as plt
from mpl_toolkits.axes_grid1 import make_axes_locatable
##----------------------------BUILDING FUNCTIONS--------------##
################################################################
#---FUNCTION TO BUILD THE NBODY BASIS---------------------------
################################################################
def build_basis(N_MO,
index_metal,index_ligand,
h00,h11,h22,h33,
K_M0M1,K_L2L3,K_M0L2,K_M0L3,K_M1L2,K_M1L3,
U_M,U_L,t_M,t_L,t_ML):
"""
This function updates the one- and two-electron matrices as a function of the parameters.
Parameters
----------
N_MO : int
Number of MOs.
index_metal : list
Indices of the metal MOs.
index_ligand : list
Indices of the ligand MOs.
h00 : float
Energy of 1st MO.
h11 : float
Energy of 2nd MO.
h22 : float
Energy of 3rd MO.
h33 : float
Energy of 4st MO.
K_M0M1 : float
Exchange integral between both metal MOs.
K_L2L3 : float
Exchange integral between both ligand MOs.
K_M0L2 : float
Exchange integral between metal M and ligand L1.
K_M0L3 : float
Exchange integral between metal M and ligand L2.
K_M1L2 : float
Exchange integral between metal M' and ligand L1.
K_M1L3 : float
Exchange integral between metal M' and ligand L2.
U_M : float
Coulomb integral on metal MOs.
U_L : float
Coulomb integral on ligand MOs.
t_M : float
Hopping between metal MOs (MC).
t_L : float
Hopping between ligand MOs (LC).
t_ML : float
Hopping between metal and ligand (MLCT/LMCT).
Returns
-------
h_ : array
One-electron matrix.
g_ : array
Two-electron matrix.
"""
# Initialization of the 1- and 2-electron matrices
h_ = np.zeros((N_MO,N_MO))
g_ = np.zeros((N_MO,N_MO,N_MO,N_MO))
# Energy of each MO
h_[0,0] = h00 # metal
h_[1,1] = h11 # metal1
h_[2,2] = h22 # ligand1
h_[3,3] = h33 # ligand2
#------- We do not use Js (Coulomb integrals) so there are only zeroes
# J_M
J_M0M1 = 0.
# J_LL
J_L2L3 = 0.
# J_ML
J_M0L2 = 0.
J_M0L3 = J_M0L2
# J_M'L
J_M1L2 = 0.
J_M1L3 = J_M1L2
#-------------
# This part constructs the Hamiltonian matrix
#-------------
# Hamiltonian with K (and J)
for i in range(N_MO):
for j in range(N_MO):
if j != i :
if (i in index_metal) and (j in index_metal):
g_[i,j,j,i] = K_M0M1
g_[i,i,j,j] = J_M0M1
elif i in index_ligand and j in index_ligand:
g_[i,j,j,i] = K_L2L3
g_[i,i,j,j] = J_L2L3
elif ( (i in index_metal and j in index_ligand) or
(j in index_metal and i in index_ligand) ) :
if ( ( i == index_ligand[0] and j == index_metal[0] ) or
( j == index_ligand[0] and i == index_metal[0] ) ):
g_[i,j,j,i] = K_M0L2
g_[i,i,j,j] = J_M0L2
if ( ( i == index_ligand[1] and j == index_metal[0] ) or
( j == index_ligand[1] and i == index_metal[0] ) ):
g_[i,j,j,i] = K_M0L3
g_[i,i,j,j] = J_M0L3
if ( ( i == index_ligand[0] and j == index_metal[1] ) or
( j == index_ligand[0] and i == index_metal[1] ) ):
g_[i,j,j,i] = K_M1L2
g_[i,i,j,j] = J_M1L2
if ( ( i == index_ligand[1] and j == index_metal[1] ) or
( j == index_ligand[1] and i == index_metal[1] ) ):
g_[i,j,j,i] = K_M1L3
g_[i,i,j,j] = J_M1L3
# Hamiltonian with U (and t)
for i in range(N_MO):
# Coulombic repulsion
if i in index_metal :
g_[i,i,i,i] = U_M
if i in index_ligand :
g_[i,i,i,i] = U_L
# Hopping
for j in range(N_MO):
if j != i :
if (i in index_metal) and (j in index_metal):
h_[i,j] = t_M
elif i in index_ligand and j in index_ligand:
h_[i,j] = t_L
elif ( (i in index_metal and j in index_ligand) or
(j in index_metal and i in index_ligand) ) :
h_[i,j] = t_ML
return h_, g_
##----------------------------ANALYSIS FUNCTIONS--------------##
################################################################
#---FUNCTION TO CLEAN THE STATES--------------------------------
################################################################
def cleaner(eigvec_SO, Op_penalty, penalty=1e3,visu=False,warning_CT=True):
"""
This function analyzes the 70 eigenstates obtained after diagonalization,
then select only the 16 states of interest (singly occupied only) by applying
a penalty operator Op_penalty that penalizes the doubly occupied states by penalty.
The 16 unpenalized states are the one of interest.
This produces a list of 16 indices that are then used by curve_analysis_spin().
Parameters
----------
eigvec_SO : array
Eigenvectors obtained after diagonalization (70,70).
Op_penalty : array
Penalty operator that should be in the form:
Op_penalty = scipy.sparse.csr_matrix((np.shape(nbody_basis)[0],np.shape(nbody_basis)[0]))
for p in range(0,N_MO):
Op_penalty += 1*((a_dagger_a[2*p,2*p]+a_dagger_a[2*p+1,2*p+1]) == 2)
penalty : float
Value of penalty.
The default is 1e3.
visu : bool, optional
True: prints the value of ref_vec.T @ Op_penalty * penalty @ ref_vec for each 16 selected candidate.
The default is False.
Returns
-------
index: array
array of (16) with the indices of the 16 states of interest.
"""
# If not penalty, return the lowest 16 states
if penalty == 0:
return [i for i in range(16)]
# Store the indices
index = []
# Loop over the 70 states
for vec in range(len(eigvec_SO)):
ref_vec = eigvec_SO[:,vec]
# Projection of the eigenvector onto the penalty operator
criteria = ref_vec.T @ Op_penalty * penalty @ ref_vec
# The criteria should be atleast two times lower than the penalty.
# Using penalty/2 and not 1 allows for adaptation of the code if one would add some t
if np.abs(criteria) < penalty/2:
if visu:
print(criteria)
index.append(vec)
# The criteria should always be 0 if there is no CT.
if warning_CT and (np.abs(criteria) > 0.1):
raise ValueError(" This code was designed in a vision where CT is impossible."+
"\n If you added some t integral, please modify/check the way the code executes."+
"The vector #"+str(vec)+" has a criteria of "+str(np.abs(criteria))+
"\n If you added some t, please provide: visu=False, warning_CT=False")
# If there is more than 16 indices, then everything will break.
if len(index) > 16:
raise ValueError("You have selected "+str(len(index))+ " states."+
" It should be 16. Please check your Op_penalty. Make sure penalty > 0")
return index
################################################################
#---FUNCTION TO ANALYSE THE RESULTS-----------------------------
################################################################
def curve_analysis_spin(lambd, all_energies, all_proj_SPIN, eigval_SO, eigvec_SO,
S_Z, S2, Proj_triplet_metal, Proj_triplet_ligand,
Op_penalty, penalty,use_index=True):
"""
This function treats a problem where the 16 microstates arising from coupling either a S_M = 1 or 0 and a S_L = 1 or 0.
Flow of selections criteria: (x = T or S, y = m (-1), z (0) or p (+1))
1) S_2: separates QTTy (5 states), Txxy (9 states) and Sxxz (2 states)
for QTTy:
S_z: separates QTTmm=QTT(-2), QTTm=QTT(-1), QTTz=QTT(0), QTTp=QTT(+1), QTTpp=QTT(+2)
for Txxy:
S_z: separates Txxm (3 states), Txxz (3 states) and Txxp (3 states)
for each batch (m_s = -1, 0 or +1):
a) Proj_triplet_metal: separates TSTy (1 state) and TTxy (2 states)
b) Proj_triplet_ligand: separates TTSy and TTTy
for Sxxz:
Proj_triplet_metal: separates SSSz from STTz
Ordering:
There are 16 states TOTALSPIN/METALSPIN/LIGANDSPIN/M_S :
m_s : mm = -2, m = -1, z = 0, p = +1, pp = +2
The states are ordered as the following:
0,1,2,3,4: QTTmm, QTTm, QTTz, QTTp, QTTpp,
5,6,7: TTTm, TTTz, TTTp,
8: STTz,
9,10,11: TTSm, TTSz, TTSp,
12,13,14: TSTm, TSTz, TSTp,
15: SSSz
Parameters
----------
lambd : int
index of lambd.
all_energies : array
array of (16,#lambd) gathering the energies of each microstate.
all_proj_SPIN : array
array of (16,#lambd,4) gathering [m_s,S(S+1),%S_M=1,%S_L=1].
eigval_SO : array
Eigenvalues of the Hamiltonian.
eigvec_SO : array
Eigenvectors of the Hamiltonian.
S_Z : array
S_Z operator.
S2 : array
S^2 operator.
Proj_triplet_metal : array
Projector onto %S_M = 1.
Proj_triplet_ligand : array
Projector onto %S_L = 1.
Op_penalty : array
Penalty operator for doubly occupied states. It penalizes CT states.
penalty : int
Amount of penalty. In general, 1e3 is great.
use_index : bool, optional
True: Allow to use the cleaner() fct (selection of the 16 states using Op_penalty).
False: Take the lowest 16 states.
This should always be activated.
The default is True.
Returns
-------
all_energies : array
array of (16,#lambd) gathering the energies of each microstate.
all_proj_SPIN : array
array of (16,#lambd,4) gathering [m_s,S(S+1),%S_M=1,%S_L=1].
"""
if use_index:
index = cleaner(eigvec_SO,Op_penalty,penalty)
eigval_SOa = [eigval_SO[idx] for idx in index]
eigvec_SOa = [eigvec_SO[:,idx] for idx in index]
else:
eigval_SOa = eigval_SO[:16]
eigvec_SOa = eigvec_SO.T[:16]
### WE LABEL states
# 1) S_2: separates QTTy (5 states), Txxy (9 states) and Sxxz (2 states)
S2_mat = np.zeros(len(eigval_SOa))
for i in range(len(eigvec_SOa)):
S2_mat[i] = eigvec_SOa[i].T @ S2 @ eigvec_SOa[i]
# Sort indices
index_sort_S2 = np.argsort(S2_mat)
# Update eigval and eigvec list using the sorted indices
sorted_eigval_global = [eigval_SOa[index] for index in index_sort_S2]
sorted_eigvec_global = [eigvec_SOa[index] for index in index_sort_S2]
# Quintet list: QTTy
eigval_Q = sorted_eigval_global[11:]
eigvec_Q = sorted_eigvec_global[11:]
# Triplet list: Txxy
eigval_T = sorted_eigval_global[2:11]
eigvec_T = sorted_eigvec_global[2:11]
# Singlet list: Sxxz
eigval_S = sorted_eigval_global[:2]
eigvec_S = sorted_eigvec_global[:2]
#--------------------------------------------------------------------------
#--------------------------------------------------------------------------
### FOR QUINTET: QTTy
# S_z: separates QTTmm=QTT(-2), QTTm=QTT(-1), QTTz=QTT(0), QTTp=QTT(+1), QTTpp=QTT(+2)
S_z_mat = np.zeros(len(eigval_Q))
for i in range(len(eigvec_Q)):
S_z_mat[i] = eigvec_Q[i].T @ S_Z @ eigvec_Q[i]
# Sort indices
index_sort_S_z = np.argsort(S_z_mat)
# Update eigval and eigvec list using the sorted indices
sorted_eigval = [eigval_Q[index] for index in index_sort_S_z]
sorted_eigvec = [eigvec_Q[index] for index in index_sort_S_z]
# QTTmm, QTTm, QTTz, QTTp, QTTpp
order_list = [0,1,2,3,4]
for myvec in range(len(order_list)):
# Takes the global index of the state from order_list
global_vec = order_list[myvec]
# Fill in all_energies
all_energies[global_vec][lambd] = sorted_eigval[myvec]
# Fill in all_proj_SPIN
all_proj_SPIN[global_vec][lambd] = [sorted_eigvec[myvec].T @ S_Z @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ S2 @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_metal @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_ligand @ sorted_eigvec[myvec]]
#--------------------------------------------------------------------------
#--------------------------------------------------------------------------
### FOR TRIPLET: Txxy
# S_z: separates Txxm (3 states), Txxz (3 states) and Txxp (3 states)
S_z_mat = np.zeros(len(eigval_T))
for i in range(len(eigvec_T)):
S_z_mat[i] = eigvec_T[i].T @ S_Z @ eigvec_T[i]
# Sort indices
index_sort_S_z = np.argsort(S_z_mat)
# Update eigval and eigvec list using the sorted indices
sorted_eigval_T = [eigval_T[index] for index in index_sort_S_z]
sorted_eigvec_T = [eigvec_T[index] for index in index_sort_S_z]
# Txxm: m_s = -1
eigval_T_m = sorted_eigval_T[:3]
eigvec_T_m = sorted_eigvec_T[:3]
# Txxz: m_s = 0
eigval_T_z = sorted_eigval_T[3:6]
eigvec_T_z = sorted_eigvec_T[3:6]
# Txxp: m_s = +1
eigval_T_p = sorted_eigval_T[6:]
eigvec_T_p = sorted_eigvec_T[6:]
#--------------------------------------------------------------------------
## FOR Txxm
# Computer trick to have a more readable/repeatable/less resources consuming code
eigval = eigval_T_m
eigvec = eigvec_T_m
# Proj_triplet_metal: separates TSTy (1 state) and TTxy (2 states)
Proj_met_mat = np.zeros(len(eigval))
for i in range(len(eigval)):
Proj_met_mat[i] = eigvec[i].T @ Proj_triplet_metal @ eigvec[i]
# Sort indices
index_sort = np.argsort(Proj_met_mat)
# Update eigval and eigvec list using the sorted indices
sorted_eigval_T_m = [eigval[index] for index in index_sort]
sorted_eigvec_T_m = [eigvec[index] for index in index_sort]
# Computer trick to have a more readable/repeatable/less resources consuming code
sorted_eigval = sorted_eigval_T_m
sorted_eigvec = sorted_eigvec_T_m
# TSTm
myvec = 0
# Global index of the state
glob_vec = 12
# Fill in all_energies
all_energies[glob_vec][lambd] = sorted_eigval[myvec]
# Fill in all_proj_SPIN
all_proj_SPIN[glob_vec][lambd] = [sorted_eigvec[myvec].T @ S_Z @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ S2 @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_metal @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_ligand @ sorted_eigvec[myvec]]
# Extract TTxm from sorted_eigval_T_m
eigval = sorted_eigval_T_m[1:]
eigvec = sorted_eigvec_T_m[1:]
# Proj_triplet_ligand: separates TTSy and TTTy
Proj_lig_mat = np.zeros(len(eigval))
for i in range(len(eigval)):
Proj_lig_mat[i] = eigvec[i].T @ Proj_triplet_ligand @ eigvec[i]
# Sort indices
index_sort = np.argsort(Proj_lig_mat)
# Update eigval and eigvec list using the sorted indices
sorted_eigval_TT = [eigval[index] for index in index_sort]
sorted_eigvec_TT = [eigvec[index] for index in index_sort]
# Computer trick to have a more readable/repeatable/less resources consuming code
sorted_eigval = sorted_eigval_TT
sorted_eigvec = sorted_eigvec_TT
# TTSm, TTTm
order_list = [9,5]
for myvec in range(len(order_list)):
# Takes the global index of the state from order_list
global_vec = order_list[myvec]
# Fill in all_energies
all_energies[global_vec][lambd] = sorted_eigval[myvec]
# Fill in all_proj_SPIN
all_proj_SPIN[global_vec][lambd] = [sorted_eigvec[myvec].T @ S_Z @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ S2 @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_metal @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_ligand @ sorted_eigvec[myvec]]
#--------------------------------------------------------------------------
## FOR Txxz
# Same comments than for Txxm
eigval = eigval_T_z
eigvec = eigvec_T_z
Proj_met_mat = np.zeros(len(eigval))
for i in range(len(eigval)):
Proj_met_mat[i] = eigvec[i].T @ Proj_triplet_metal @ eigvec[i]
index_sort = np.argsort(Proj_met_mat)
sorted_eigval_T_z = [eigval[index] for index in index_sort]
sorted_eigvec_T_z = [eigvec[index] for index in index_sort]
sorted_eigval = sorted_eigval_T_z
sorted_eigvec = sorted_eigvec_T_z
myvec = 0
glob_vec = 13
all_energies[glob_vec][lambd] = sorted_eigval[myvec]
all_proj_SPIN[glob_vec][lambd] = [sorted_eigvec[myvec].T @ S_Z @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ S2 @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_metal @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_ligand @ sorted_eigvec[myvec]]
# TSTm
eigval = sorted_eigval_T_z[1:]
eigvec = sorted_eigvec_T_z[1:]
Proj_lig_mat = np.zeros(len(eigval))
for i in range(len(eigval)):
Proj_lig_mat[i] = eigvec[i].T @ Proj_triplet_ligand @ eigvec[i]
index_sort = np.argsort(Proj_lig_mat)
sorted_eigval_TT = [eigval[index] for index in index_sort]
sorted_eigvec_TT = [eigvec[index] for index in index_sort]
sorted_eigval = sorted_eigval_TT
sorted_eigvec = sorted_eigvec_TT
# TTSm, TTTm
order_list = [10,6]
for myvec in range(len(order_list)):
global_vec = order_list[myvec]
all_energies[global_vec][lambd] = sorted_eigval[myvec]
all_proj_SPIN[global_vec][lambd] = [sorted_eigvec[myvec].T @ S_Z @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ S2 @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_metal @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_ligand @ sorted_eigvec[myvec]]
## FOR Txxp
# Same comments than for Txxm
eigval = eigval_T_p
eigvec = eigvec_T_p
Proj_met_mat = np.zeros(len(eigval))
for i in range(len(eigval)):
Proj_met_mat[i] = eigvec[i].T @ Proj_triplet_metal @ eigvec[i]
index_sort = np.argsort(Proj_met_mat)
sorted_eigval_T_p = [eigval[index] for index in index_sort]
sorted_eigvec_T_p = [eigvec[index] for index in index_sort]
sorted_eigval = sorted_eigval_T_p
sorted_eigvec = sorted_eigvec_T_p
myvec = 0
glob_vec = 14
all_energies[glob_vec][lambd] = sorted_eigval[myvec]
all_proj_SPIN[glob_vec][lambd] = [sorted_eigvec[myvec].T @ S_Z @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ S2 @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_metal @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_ligand @ sorted_eigvec[myvec]]
# TSTm
eigval = sorted_eigval_T_p[1:]
eigvec = sorted_eigvec_T_p[1:]
Proj_lig_mat = np.zeros(len(eigval))
for i in range(len(eigval)):
Proj_lig_mat[i] = eigvec[i].T @ Proj_triplet_ligand @ eigvec[i]
index_sort = np.argsort(Proj_lig_mat)
sorted_eigval_TT = [eigval[index] for index in index_sort]
sorted_eigvec_TT = [eigvec[index] for index in index_sort]
sorted_eigval = sorted_eigval_TT
sorted_eigvec = sorted_eigvec_TT
# TTSm, TTTm
order_list = [11,7]
for myvec in range(len(order_list)):
global_vec = order_list[myvec]
all_energies[global_vec][lambd] = sorted_eigval[myvec]
all_proj_SPIN[global_vec][lambd] = [sorted_eigvec[myvec].T @ S_Z @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ S2 @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_metal @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_ligand @ sorted_eigvec[myvec]]
#--------------------------------------------------------------------------
#--------------------------------------------------------------------------
### FOR SINGLET: Sxxz
# Proj_triplet_metal: separates SSSz from STTz
Double_Proj_mat = np.zeros(len(eigval_S))
for i in range(len(eigval_S)):
Double_Proj_mat[i] = (eigvec_S[i].T @ Proj_triplet_metal @ eigvec_S[i] +
eigvec_S[i].T @ Proj_triplet_ligand @ eigvec_S[i])/2
# Sort indices
index_sort = np.argsort(Double_Proj_mat)
# Update eigval and eigvec list using the sorted indices
sorted_eigval_S = [eigval_S[index] for index in index_sort]
sorted_eigvec_S = [eigvec_S[index] for index in index_sort]
sorted_eigval,sorted_eigvec = sorted_eigval_S,sorted_eigvec_S
# SSSz, STTz
order_list = [15,8]
for myvec in range(len(order_list)):
# Takes the global index of the state from order_list
global_vec = order_list[myvec]
# Fill in all_energies
all_energies[global_vec][lambd] = sorted_eigval[myvec]
# Fill in all_proj_SPIN
all_proj_SPIN[global_vec][lambd] = [sorted_eigvec[myvec].T @ S_Z @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ S2 @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_metal @ sorted_eigvec[myvec],
sorted_eigvec[myvec].T @ Proj_triplet_ligand @ sorted_eigvec[myvec]]
return all_energies, all_proj_SPIN
##----------------------------PLOTTING FUNCTIONS--------------##
################################################################
#---PLOTTING of m_s, S2, ProjS_M and ProjS_L for the 16 states--
################################################################
def plot_ms_S2_ProjSM_ProjSL(lambd, Q, lambd_val,all_proj_SPIN,
K_M0L2, print_var="lambda",
txt_fontsize=20,
name_file="plot_ms_S2_ProjSM_ProjSL.png",
save=False,mlml=None):
"""
This creates a 16*4 tabular plot:
horizontal: QTT(-2), QTT(-1), QTT(0), QTT(+1), QTT(+2), TTT(-1), TTT(0), TTT(+1),
STT(0), TTS(-1), TTS(0), TTS(+1), TST(-1), TST(0), TST(+1), SSS(0)
vertical (top -> bottom): %(S_L = 1), %(S_M = 1), S(S+1), m_s
This helps identifying with a simple glimpse the local and global spin properties of our 16 states of interest.
Parameters
----------
lambd : float
Value of lambda.
Q : float
Value of Q.
lambd_val : int
Index of lambda or Q or mlml in all_proj_SPIN.
all_proj_SPIN : array
Array of (16,#,4) gathering [m_s,S(S+1),%S_M=1,%S_L=1].
K_M0L2 : float
Value of K_1 integral.
print_var : string, optional
The name of the parameter to go fecth in all_proj_SPIN.
"lambda" for lambda.
"Q" for Q.
"mlml" for {m_l_M;m_l_M'}.
The default is "lambda".
name_file : string
Name of the file to print.
save : bool, optional
True: save the plot.
False: don't save the plot.
The default is False.
mlml : string, optional
Label of the mlml.
The default is None. It is only used when print_var == "mlml".
Returns
-------
None.
"""
# Initialize the subplots
fig, axs = plt.subplots(nrows=4,figsize=(24,10), sharex=True)
# Number of significative digits to be shown
number_float = '%.2f'
# Labels for each state
label_list = ["$QTT$\n$(-2)$", "$QTT$\n$(-1)$", "$QTT$\n$(0)$", "$QTT$\n$(+1)$", "$QTT$\n$(+2)$",
"$TTT$\n$(-1)$", "$TTT$\n$(0)$", "$TTT$\n$(+1)$",
"$STT$\n$(0)$",
"$TTS$\n$(-1)$", "$TTS$\n$(0)$", "$TTS$\n$(+1)$",
"$TST$\n$(-1)$", "$TST$\n$(0)$", "$TST$\n$(+1)$",
"$SSS$\n$(0)$"]
# Title of the Figure
if print_var == "Q":
fig.suptitle("$\\lambda = " + str(np.round(lambd,7))+"$, $Q = " + str(np.round(Q,7))+
"$, $K_1 = "+str(K_M0L2)+"$",fontsize=txt_fontsize,x=0.5,y=.92)
elif print_var == "lambda":
fig.suptitle("$\\lambda = " + str(np.round(lambd,7))+"$, $Q = " + str(np.round(Q,7))+
"$, $K_1 = "+str(K_M0L2)+"$",fontsize=txt_fontsize,x=0.5,y=.92)
elif print_var == "mlml" and mlml != None:
fig.suptitle("$\\lambda = " + str(np.round(lambd,7))+"$, $Q = " + str(np.round(Q,7))+
"$, $K_1 = "+str(K_M0L2)+"$, $\\{m_{l_{M}};m_{l_{M'}}\\}$ = "+mlml,fontsize=txt_fontsize,x=0.5,y=.92)
else:
raise ValueError('Please select print_var = "Q" or "lambda" or "mlml')
# Microstates
x = label_list
# No need to modify this, it helps to know what is plotted where
spins = ["m_s","S2","S_met","S_lig"]
#--------------------------------------------------------------------------
## m_s data
# position of the graph
val,ax = 0,3
# Matplotlib trick to use colorbar(pcolormesh())
# I plot a duplicate over a y "range" [m_s,m_s2]
# This will make the figure continuous on y
# Disclaimer: THIS COULD BE IMPROVED BUT IT WORKS FOR NOW.
y = spins[val]
Y = np.array([y,y+"2"])
z = all_proj_SPIN[:,lambd_val].T[val]
Z = np.array([z,z])
# Separates the results (from -2 to +2) in shades of gray (-2: black, 0: gray, +2: white)
plot_colormesh_ms = axs[ax].pcolormesh(x,Y,Z,cmap='gray')
divider = make_axes_locatable(axs[ax])
cax = divider.append_axes('right', size='5%', pad=0.05)
# Plot the colorbars
fig.colorbar(plot_colormesh_ms, cax=cax, orientation='vertical')
# Add labelling inside boxes
for xx in range(len(x)):
# Text in white for dark background
if Z[0,xx] < -0.5:
axs[ax].text(xx, 0.5, number_float % Z[0,xx],
horizontalalignment='center',
verticalalignment='center',color="white",fontsize=txt_fontsize,
)
# Text in black for light background
else:
axs[ax].text(xx, 0.5, number_float % Z[0,xx],
horizontalalignment='center',
verticalalignment='center',fontsize=txt_fontsize,
)
axs[ax].yaxis.get_label().set_fontsize(txt_fontsize)
#--------------------------------------------------------------------------
## S(S+1) data
# Same comments than for m_s
# Exceptions:
# - colormesh is (0: red, 2: pink, 3: white, 6: blue)
# - white text for S(S+1) > 4 and for S(S+1) < 1
# - black text for the rest
val,ax = 1,2
y = spins[val]
Y = np.array([y,y+"2"])
z = all_proj_SPIN[:,lambd_val].T[val]
Z = np.array([z,z])
plot_colormesh_ms = axs[ax].pcolormesh(x,Y,Z, cmap='RdBu')
divider = make_axes_locatable(axs[ax])
cax = divider.append_axes('right', size='5%', pad=0.05)
fig.colorbar(plot_colormesh_ms, cax=cax, orientation='vertical')
for xx in range(len(x)):
if 1.< Z[0,xx] < 4:
axs[ax].text(xx, 0.5, number_float % Z[0,xx],
horizontalalignment='center',
verticalalignment='center',fontsize=txt_fontsize,
)
else:
axs[ax].text(xx, 0.5, number_float % Z[0,xx],
horizontalalignment='center',
verticalalignment='center',color="white",fontsize=txt_fontsize,
)
axs[ax].yaxis.get_label().set_fontsize(txt_fontsize)
#--------------------------------------------------------------------------
# S_m data
# Same comments than for m_s
# Exceptions:
# - colormesh is (0: purple, 0.5: blue, 1: yellow)
# - white text for S_m < 0.3
# - black text for the rest
val,ax = 2,1
y = spins[val]
Y = np.array([y,y+"2"])
z = all_proj_SPIN[:,lambd_val].T[val]
Z = np.array([z,z])
plot_colormesh_ms = axs[ax].pcolormesh(x,Y,Z)
divider = make_axes_locatable(axs[ax])
cax = divider.append_axes('right', size='5%', pad=0.05)
fig.colorbar(plot_colormesh_ms, cax=cax, orientation='vertical')
for xx in range(len(x)):
if Z[0,xx] < 0.3:
axs[ax].text(xx, 0.5, number_float % Z[0,xx],
horizontalalignment='center',
verticalalignment='center',color="white",fontsize=txt_fontsize,
)
else:
axs[ax].text(xx, 0.5, number_float % Z[0,xx],
horizontalalignment='center',
verticalalignment='center',fontsize=txt_fontsize,
)
axs[ax].yaxis.get_label().set_fontsize(txt_fontsize)
#--------------------------------------------------------------------------
# S_l data
# Same comments than for m_s
# Exceptions:
# - colormesh is (0: purple, 0.5: blue, 1: yellow)
# - white text for S_m < 0.3
# - black text for the rest
val,ax = 3,0
y = spins[val]
Y = np.array([y,y+"2"])
z = all_proj_SPIN[:,lambd_val].T[val]
Z = np.array([z,z])
plot_colormesh_ms = axs[ax].pcolormesh(x,Y,Z)
divider = make_axes_locatable(axs[ax])
cax = divider.append_axes('right', size='5%', pad=0.05)
fig.colorbar(plot_colormesh_ms, cax=cax, orientation='vertical')
for xx in range(len(x)):
if Z[0,xx] < 0.3:
axs[ax].text(xx, 0.5, number_float % Z[0,xx],
horizontalalignment='center',
verticalalignment='center',color="white",fontsize=txt_fontsize,
)
else:
axs[ax].text(xx, 0.5, number_float % Z[0,xx],
horizontalalignment='center',
verticalalignment='center',fontsize=txt_fontsize,
)
axs[ax].yaxis.get_label().set_fontsize(txt_fontsize)
#--------------------------------------------------------------------------
# Remove all ticks
axs[3].set_yticks([])
axs[2].set_yticks([])
axs[1].set_yticks([])
axs[0].set_yticks([])
# Add custom labels for each plots (accepts LateX)
axs[3].set_ylabel('$m_s$')
axs[2].set_ylabel('$S(S+1)$')
axs[1].set_ylabel('$\\%(S_M = 1)$')
axs[0].set_ylabel('$\\%(S_L = 1)$')
# Save the Figure as pdf if save == True
if save:
plt.savefig(name_file, bbox_inches='tight')
# Show the Figure in Spyder
plt.show()
################################################################
#---PLOTTING of Energy = f({m_l_M;m_l_M'})----------------------
################################################################
def plot_graph_mlml(lambd,all_energies,label_y,
ymin,ymax,
K_M0L2,K_M1L2,states=[i for i in range(16)],
name_file="plot_graph_mlml.png",
save=False,
size_linewidth=3, size_figsize=(16,10), size_fontsize=16, alpha_t=0.5):
"""
This plots a graph: Energy as a function of different sets of {m_l_M;m_l_M'}
One can select the states to plot by giving an indices list.
It can plot a maximum of 16 states TOTALSPIN/METALSPIN/LIGANDSPIN/M_S :
m_s : mm = -2, m = -1, z = 0, p = +1, pp = +2
The indices of the states are the following:
0,1,2,3,4: QTTmm, QTTm, QTTz, QTTp, QTTpp,
5,6,7: TTTm, TTTz, TTTp,
8: STTz,
9,10,11: TTSm, TTSz, TTSp,
12,13,14: TSTm, TSTz, TSTp,
15: SSSz
Parameters
----------
lambd : float
Lambda value.
all_energies : array
Array of (16,len(label_y)) gathering the energies of each microstate.
label_y : list(string)
List of the {m_l_M;m_l_M'} sets.
xmin : float
Minimum value on x axis.
xmax : float
Maximum value on x axis.
ymin : float
Minimum value on y axis.
ymax : float
Maximum value on y axis.
K_M0L2 : float
Value of K_1 integral.
K_M1L2 : float
Value of K_1' integral.
states : list(int), optional
List of indices of the states to be plotted.
The default is [i for i in range(16)].
name_file : string, optional
Name of the file to be created if save == True.
The default is "plot_graph_mlml.png".
save : bool, optional
Save the Figure if True.
The default is False.
size_linewidth : int, optional
Size of the lines.
The default is 2.
size_figsize : tuple(int,int), optional
(x,y) size of the Figure in cm.
The default is (16,10).
size_fontsize : int, optional
Size of the font.
The default is 16.
alpha_t : float, optional
Transparency of the lines.
The default is 0.5.
Returns
-------
None.
"""
# Size of figure
fig, ax = plt.subplots(figsize=size_figsize)
# Title of Figure
ax.set_title("Energy as a function of $\\{m_{l_M};m_{l_{M'}}\\}$",pad=20)
# Add a text box inside the figure
# textstr = "$\\lambda= "+str(lambd)+"$, $K_1 = "+str(K_M0L2)+"$, $K_1^{\\prime} = "+str(np.round(K_M1L2,7))+"$"
textstr = "$\\lambda= "+str(lambd)+"$, $K_1 = K_1^{\\prime} = "+str(np.round(K_M1L2,7))+"$"
ax.text(0.05,0.95, textstr,transform=ax.transAxes, fontsize=24,
verticalalignment='top',bbox=dict(boxstyle='round',facecolor='white'))
# Set the limits of y
ax.set_ylim([ymin, ymax])
# Label on the x and y axis (it accepts LateX)
plt.xlabel("$\\{ m_{l_{M}}; m_{l_{M'}} \\}$",fontsize=38)
plt.ylabel("Energy ($K_M$ units)",fontsize=34)
# y: set of {m_l_M;m_l_M'}; x: Energy
x = all_energies
y = label_y
# Label of each state
label_list = ["$QTT$ $(-2)$", "$QTT$ $(-1)$", "$QTT$ $(0)$", "$QTT$ $(+1)$", "$QTT$ $(+2)$",
"$TTT$ $(-1)$", "$TTT$ $(0)$", "$TTT$ $(+1)$",
"$STT$ $(0)$",
"$TTS$ $(-1)$", "$TTS$ $(0)$", "$TTS$ $(+1)$",
"$TST$ $(-1)$", "$TST$ $(0)$", "$TST$ $(+1)$",
"$SSS$ $(0)$"]
# Marker of each state
markers = ["s","s","s","s","^",
"s","s","s",
"o",
"s","s","s",
"s","s","s",
"X"]
# Linestyle of each state
linestyles = ["dashdot","dashed","solid","dotted","solid",
"dashed","solid","dotted",
"solid",
"dashed","solid","dotted",
"dashed","solid","dotted",
"solid"]
# Color of each state
colors = ["black","black","black","black","black",
"blue","blue","blue",
"black",
"green","green","green",
"red","red","red",
"black"]
# This is just to plot (if there is) state 15 before states 12, 13 and 14
# if 12 in states:
# states.remove(12)
# states.append(12)
# if 13 in states:
# states.remove(13)
# states.append(13)
# if 14 in states:
# states.remove(14)
# states.append(14)
## PLOT FIRST THE MARKERS
for i in states:
if i == 4 or i == 8:
plt.plot(y,x[i],marker=markers[i], color=colors[i],
linewidth=size_linewidth,markersize=10,label='_Hidden')
elif i == 15:
plt.plot(y,x[i],marker=markers[i], color=colors[i],linestyle='None',
markersize=10,label=label_list[i])
else:
plt.plot(y,x[i],markers[i], color=colors[i],linewidth=size_linewidth,label='_Hidden')
## THEN PLOT THE LINES
# Store the label of the states that are going to be plotted
final_label_list = []
for i in states:
if i == 4 or i == 8:
plt.plot(y,x[i],linestyle=linestyles[i],marker=markers[i], color=colors[i],
linewidth=size_linewidth,alpha=alpha_t,label=label_list[i])
final_label_list.append(label_list[i])
elif i == 15:
plt.plot(y,x[i],linestyle=linestyles[i], color=colors[i],
linewidth=size_linewidth,alpha=alpha_t,label='_Hidden')
final_label_list.append(label_list[i])
else:
plt.plot(y,x[i],linestyle=linestyles[i], marker=markers[i],color=colors[i],
linewidth=size_linewidth,alpha=alpha_t,label=label_list[i])
final_label_list.append(label_list[i])
# Legend
handles, labels = plt.gca().get_legend_handles_labels()
leg = plt.legend(handles[1:]+[handles[0]],
labels[1:]+[labels[0]],
bbox_to_anchor=(1,0.5),loc='center left')
for lh in leg.legend_handles:
lh.set_alpha(1)
# plt.legend(labels=final_label_list, bbox_to_anchor=(1,0.5),loc='center left')
# Show gridlines
plt.grid(True)
# Save Figure
if save == True:
plt.savefig(name_file, bbox_inches='tight')
# Show Figure in Spyder
plt.show()
################################################################
#---PLOTTING of Energy = f(lambda)------------------------------
################################################################
def plot_graph_lambd(all_energies, lambd_var,
xmin, xmax, ymin, ymax,
K_M0L2,K_M1L2,states=[i for i in range(16)],
name_file="plot_graph_lambda.png",
save=False,s=True,
size_linewidth=3,size_figsize=(16,10),size_fontsize=16):
"""
This plots a graph: Energy as a function of different lambda values.
One can select the states to plot by giving an indices list.
It can plot a maximum of 16 states TOTALSPIN/METALSPIN/LIGANDSPIN/M_S :
m_s : mm = -2, m = -1, z = 0, p = +1, pp = +2
The indices of the states are the following:
0,1,2,3,4: QTTmm, QTTm, QTTz, QTTp, QTTpp,
5,6,7: TTTm, TTTz, TTTp,
8: STTz,
9,10,11: TTSm, TTSz, TTSp,
12,13,14: TSTm, TSTz, TSTp,
15: SSSz
Parameters
----------
all_energies : array
Array of (16,len(lambd_var)) gathering the energies of each microstate.
lambd_var : list(string)
List of the lambda values.
xmin : float
Minimum value on x axis.
xmax : float
Maximum value on x axis.
ymin : float
Minimum value on y axis.
ymax : float
Maximum value on y axis.
K_M0L2 : float
Value of K_1 integral.
K_M1L2 : float
Value of K_1' integral.
states : list(int), optional
List of indices of the states to be plotted.
The default is [i for i in range(16)].
name_file : string, optional
Name of the file to be created if save == True.
The default is "plot_graph_lambda.png".
save : bool, optional
Save the Figure if True.
The default is False.
size_linewidth : int, optional
Size of the lines.
The default is 2.
size_figsize : tuple(int,int), optional
(x,y) size of the Figure in cm.
The default is (16,10).
size_fontsize : int, optional
Size of the font.
The default is 16.
Returns
-------
None.
"""
# Size of Figure
fig, ax = plt.subplots(figsize=size_figsize)
# Title of the Figure (it can be commented to not have any title)
ax.set_title("Energy as a function of $\\lambda$",pad=20)
# Text box inside the graph
textstr = "$K_1 = "+str(K_M0L2)+"$, $K_1^{\\prime} = "+str(np.round(K_M1L2,7))+"$"
ax.text(0.05,0.95, textstr,transform=ax.transAxes, fontsize=24,
verticalalignment='top',bbox=dict(boxstyle='round',facecolor='white'))
# Set the limits of y and x
ax.set_ylim([ymin, ymax])
ax.set_xlim([xmin, xmax])
# Set the spacing between the x ticks (optional)
#ax.set_xticks(np.arange(xmin,xmax,0.1))
# Label on the x and y axis (it accepts LateX)
plt.xlabel("$\\lambda$",fontsize=34)
plt.ylabel("Energy ($K_M$ units)",fontsize=38)
# y: value of lambd; x: Energy
y = lambd_var
x = all_energies