pridepy/pyproject.toml at master · PRIDE-Archive/pridepy · GitHub

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[project]
name = "pridepy"
version = "0.0.16"
description = "Python Client library for PRIDE Rest API"
readme = "README.md"
requires-python = ">=3.9"
license = { text = "Apache-2.0" }
authors = [
    { name = "PRIDE Team", email = "pride-support@ebi.ac.uk" },
]
maintainers = [
    { name = "PRIDE Team", email = "pride-support@ebi.ac.uk" },
]
keywords = [
    "PRIDE",
    "proteomics",
    "mass-spectrometry",
    "API",
    "big data",
    "bioinformatics",
    "data science",
]
classifiers = [
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: Apache Software License",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    "Development Status :: 5 - Production/Stable",
]
dependencies = [
    "requests>=2.31.0",
    "ratelimit>=2.2.1",
    "click>=8.1.7",
    "tqdm>=4.66.1",
    "boto3>=1.34.61",
    "botocore>=1.34.74",
    "httpx>=0.27.0",
    "defusedxml>=0.7.1",
]

[project.optional-dependencies]
dev = [
    "pytest>=8.0.0",
    "pytest-cov>=4.1.0",
    "black>=24.1.0",
    "isort>=5.13.0",
    "mypy>=1.8.0",
    "flake8>=7.0.0",
]

[project.urls]
PyPI = "https://pypi.org/project/pridepy/"
PRIDE = "https://www.ebi.ac.uk/pride/archive/"
Documentation = "https://github.com/PRIDE-Archive/pridepy#readme"
Repository = "https://github.com/PRIDE-Archive/pridepy"
License = "https://github.com/PRIDE-Archive/pridepy/LICENSE"

[project.scripts]
pridepy = "pridepy:main"

[tool.setuptools]
include-package-data = true

[tool.setuptools.packages.find]
where = ["."]
include = ["pridepy*"]

[tool.setuptools.package-data]
pridepy = [
    "aspera/etc/*",
    "aspera/key/*",
    "aspera/linux-32/*",
    "aspera/linux-64/*",
    "aspera/mac-intel/*",
    "aspera/windows-32/*",
    "aspera/windows-64/*",
]

[tool.black]
line-length = 99
target-version = ["py39"]
include = '\.pyi?$'
extend-exclude = '''
# A regex preceded with ^/ will apply only to files and directories
# in the root of the project.
^/tests/
'''

[tool.isort]
profile = "black"
multi_line_output = 3
line_length = 99
include_trailing_comma = true
force_grid_wrap = 0
use_parentheses = true
ensure_newline_before_comments = true

[tool.mypy]
python_version = "3.9"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true
disallow_incomplete_defs = true
check_untyped_defs = true
disallow_untyped_decorators = false
no_implicit_optional = true
warn_redundant_casts = true
warn_unused_ignores = true
warn_no_return = true
warn_unreachable = true

[build-system]
requires = ["setuptools>=68", "wheel"]
build-backend = "setuptools.build_meta"