documentation/mkdocs-courses.yml at main · OpenScience-Collective/documentation · GitHub

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# yaml-language-server: $schema=https://squidfunk.github.io/mkdocs-material/schema.json

site_name: OSC Courses
site_url: https://courses.osc.earth
site_author: Open Science Collective
site_description: >-
  Free, open courses from the Open Science Collective on AI-powered research
  workflows, scientific computing, and open science tools.

repo_name: OpenScience-Collective
repo_url: https://github.com/OpenScience-Collective

copyright: Copyright &copy; 2026 Open Science Collective

docs_dir: courses
site_dir: site-courses

theme:
  name: material
  custom_dir: overrides
  favicon: assets/logo.png
  logo: assets/logo.png
  icon:
    repo: fontawesome/brands/github

  features:
    - announce.dismiss
    - content.action.edit
    - content.action.view
    - content.code.annotate
    - content.code.copy
    - content.tabs.link
    - navigation.footer
    - navigation.indexes
    - navigation.instant
    - navigation.instant.prefetch
    - navigation.sections
    - navigation.tabs
    - navigation.tabs.sticky
    - navigation.top
    - navigation.tracking
    - search.highlight
    - search.share
    - search.suggest
    - toc.follow

  palette:
    - media: "(prefers-color-scheme: light)"
      scheme: default
      primary: teal
      accent: deep purple
      toggle:
        icon: material/brightness-7
        name: Switch to dark mode
    - media: "(prefers-color-scheme: dark)"
      scheme: slate
      primary: teal
      accent: deep purple
      toggle:
        icon: material/brightness-4
        name: Switch to light mode

  font:
    text: Inter
    code: JetBrains Mono

plugins:
  - search:
      separator: '[\s\-,:!=\[\]()"`/]+|\.(?!\d)|&[lg]t;|(?!\b)(?=[A-Z][a-z])'
  - minify:
      minify_html: true
  - section-index

markdown_extensions:
  - abbr
  - admonition
  - attr_list
  - def_list
  - footnotes
  - md_in_html
  - tables
  - toc:
      permalink: true
  - pymdownx.arithmatex:
      generic: true
  - pymdownx.betterem:
      smart_enable: all
  - pymdownx.caret
  - pymdownx.details
  - pymdownx.emoji:
      emoji_index: !!python/name:material.extensions.emoji.twemoji
      emoji_generator: !!python/name:material.extensions.emoji.to_svg
  - pymdownx.highlight:
      anchor_linenums: true
      line_spans: __span
      pygments_lang_class: true
  - pymdownx.inlinehilite
  - pymdownx.keys
  - pymdownx.magiclink
  - pymdownx.mark
  - pymdownx.smartsymbols
  - pymdownx.superfences:
      custom_fences:
        - name: mermaid
          class: mermaid
          format: !!python/name:pymdownx.superfences.fence_code_format
  - pymdownx.tabbed:
      alternate_style: true
  - pymdownx.tasklist:
      custom_checkbox: true
  - pymdownx.tilde

extra:
  homepage: https://osc.earth
  social:
    - icon: fontawesome/brands/github
      link: https://github.com/OpenScience-Collective
    - icon: fontawesome/brands/discord
      link: https://discord.gg/5dWJCUmUww

nav:
  - Home: index.md
  - Agentic Research Course:
      - agentic-research/index.md
      - "Week 1: Git, GitHub, CLI": agentic-research/week-01.md
      - "Week 2: Claude Code Setup": agentic-research/week-02.md
      - "Week 3: Project Management with AI": agentic-research/week-03.md
      - "Week 4: CI/CD and Code Quality": agentic-research/week-04.md
      - "Week 5: Literature Search and Review": agentic-research/week-05.md
      - "Week 6: Grant Proposal Writing": agentic-research/week-06.md
      - "Week 7: Manuscript Preparation and Peer Review": agentic-research/week-07.md
      - "Week 8: Scientific Figures": agentic-research/week-08.md