Manual PDF retrieval queue: lit-review Phase 2 paywalled papers

[neuromechanist]

Phase 2 (issue #17) collection completed; 25 of 98 cards have an archived PDF in the repo (CC-BY, public-domain, or open archive). The remaining 73 cards have full card.md, source.md (abstract / canonical metadata), and meta.json but no source.pdf because the publisher requires authenticated access and no publisher token was configured.

This tracking issue lists those papers with DOIs so we can retrieve them via institutional access in a single batch and add them under their slug folders.

Workflow per paper:

1. Open the DOI; download the PDF via Caltech / institutional proxy.
2. Save as research/collection/<strand>/<slug>/source.pdf.
3. Update meta.json: pdf_path: "source.pdf", pdf_status: "archived", fill pdf_sha256 (use shasum -a 256 source.pdf), set redistribution_ok: false if license still forbids redistribution.
4. Update card.md frontmatter pdf_status and pdf_path to match.
5. Run Mistral conversion or pdftotext on the PDF and overwrite source.md with the cleaner extraction; bump md_quality.

Do not commit source.pdf for papers with redistribution_ok: false. Keep the PDF locally in the slug folder, but add the slug pattern to a local .gitignore if needed.

Part of epic #15 (lit-review). Closes nothing automatically; close when all rows handled or when the user decides further attempts are not worth it.

High-relevance shortlist (start here)

These are the most load-bearing for Phase 3 synthesis and Phase 4 direction paper:

#	Strand	Slug	DOI
1	psychophysics	bartels-zeki-2008-natural-vision-mt	10.1093/cercor/bhm107
2	psychophysics	nishimoto-2011-movie-reconstruction	10.1016/j.cub.2011.08.031
3	psychophysics	hasson-2004-isc-natural-vision	10.1126/science.1089506
4	psychophysics	adelson-bergen-1985-spatiotemporal-energy	10.1364/JOSAA.2.000284
5	action	saygin-2007-sts-lesions	10.1093/brain/awm162
6	action	rizzolatti-2004-mirror-neuron-system	10.1146/annurev.neuro.27.070203.144230
7	action	kilner-2007-predictive-coding-mirror	10.1007/s10339-007-0170-2
8	action	zacks-2007-event-segmentation	10.1037/0033-2909.133.2.273
9	action	speer-2007-narrative-event-boundaries	10.1111/j.1467-9280.2007.01920.x
10	action	baldassano-2017-event-boundaries	10.1016/j.neuron.2017.06.041
11	action	lerner-2011-temporal-receptive-windows	10.1523/JNEUROSCI.3684-10.2011
12	action	chen-2017-shared-memories	10.1038/nn.4450
13	language	hasson-2004-intersubject-synchronization	10.1126/science.1089506
14	language	lankinen-2014-meg-movie-consistency	10.1016/j.neuroimage.2014.02.004
15	language	magliano-2011-continuity-editing	10.1111/j.1551-6709.2011.01202.x
16	language	castelli-2000-animations-mentalising	10.1006/nimg.2000.0612
17	language	naci-2014-suspenseful-movie	10.1073/pnas.1407007111
18	language	vanderwal-2015-inscapes	10.1016/j.neuroimage.2015.07.069
19	language	benyakov-2018-hippocampal-film-editor	10.1523/JNEUROSCI.0524-18.2018
20	emotion	saarimaki-2016-discrete-emotions	10.1093/cercor/bhv086
21	emotion	nummenmaa-2012-emotion-synchrony	10.1073/pnas.1206095109
22	emotion	lindquist-2012-emotion-meta-analysis	10.1017/S0140525X11000446
23	emotion	glocker-2009-baby-schema	10.1073/pnas.0811620106
24	emotion	schubring-schupp-2023-alpha-emotion	10.1111/psyp.14438

Note: rows 3 and 13 are the same paper (Hasson et al. 2004 Science) cited under two strands; one PDF download covers both. Place under research/collection/psychophysics/hasson-2004-isc-natural-vision/source.pdf and add a relative symlink (or duplicate) for the language slug.

Full retrieval queue (medium-relevance and others)

Psychophysics (10 additional)

#	Slug	DOI
25	dimigen-2011-frp-natural-reading	10.1037/a0023885
26	carandini-heeger-2011-normalization	10.1038/nrn3136
27	simoncelli-olshausen-2001-natural-image-stats	10.1146/annurev.neuro.24.1.1193
28	born-bradley-2005-mt-mst	10.1146/annurev.neuro.26.041002.131052
29	dorr-2010-eye-movements-natural-movies	10.1167/10.10.28
30	tobimatsu-celesia-2006-vep-pathophysiology	10.1016/j.clinph.2006.01.004
31	riesenhuber-poggio-1999-hmax	10.1038/14819
32	hubel-wiesel-1962-receptive-fields-cat-v1	10.1113/jphysiol.1962.sp006837
33	kaneshiro-2021-music-eeg-isc	10.1101/2021.04.14.439913
34	lalor-foxe-2010-natural-speech-trf	10.1111/j.1460-9568.2009.07055.x

Action (9 additional)

#	Slug	DOI
35	johansson-1973-biological-motion	10.3758/BF03212378
36	klin-2009-biological-motion-autism	10.1038/nature07868
37	iacoboni-2009-mirror-empathy	10.1146/annurev.psych.60.110707.163604
38	pineda-2005-mu-rhythm-mirror	10.1016/j.brainresrev.2005.04.005
39	oberman-2006-mu-mirror-autism	10.1093/scan/nsl022
40	sliwa-2017-macaque-social-network	10.1126/science.aam6383
41	castelli-2000-heider-simmel	10.1006/nimg.2000.0612
42	klin-2002-visual-fixation-autism	10.1001/archpsyc.59.9.809
43	hasson-2010-natural-stimulation	10.1016/j.tics.2009.10.011

Emotion (16 additional)

#	Slug	DOI
44	kragel-2019-emonet-visual	10.1126/sciadv.aaw4358
45	cowen-keltner-2017-27-emotions	10.1073/pnas.1702247114
46	saxe-kanwisher-2003-tpj-tom	10.1016/S1053-8119(03)00230-1
47	ledoux-2010-amygdala-many-roads	10.1038/nrn2920
48	sergerie-2008-amygdala-meta-analysis	10.1016/j.neubiorev.2007.12.002
49	etkin-2011-acc-mpfc-emotion	10.1016/j.tics.2010.11.004
50	wager-2013-neurologic-pain-signature	10.1056/NEJMoa1204471
51	schmalzle-2020-coupled-brains	10.1027/1864-1105/a000271
52	kauttonen-2015-cinematic-fmri	10.1016/j.neuroimage.2015.01.063
53	davidson-2000-affective-style	10.1037/0003-066X.55.11.1196
54	coan-allen-2004-frontal-asymmetry	10.1016/j.biopsycho.2004.03.002
55	reznik-allen-2018-frontal-asymmetry	10.1111/psyp.12965
56	mar-2011-narrative-social-cognition	10.1146/annurev-psych-120709-145406
57	tamir-2015-fiction-default-network	10.1093/scan/nsv114
58	singer-2004-empathy-pain	10.1126/science.1093535
59	zaki-ochsner-2012-empathy-neural	10.1038/nn.3085

Notes for batch retrieval

• Most rows resolve via Caltech library proxy; those that don't (Annual Reviews, OUP older issues) may need a direct request.
• For PNAS pre-2017 (rows 21, 22, 45) the paper is freely readable on pnas.org but redistribution is restricted; download for local Phase 3 reading and keep redistribution_ok: false.
• kragel-2019-emonet-visual (row 44) is CC-BY-NC, available open access; not committed because of the project's no-NC policy. If we revise the policy, this one can be archived directly.
• kaneshiro-2021-music-eeg-isc (row 33) is bioRxiv with default CC-BY-NC-ND; same NC policy applies.
• hubel-wiesel-1962 (row 32) is past 60 years old; copyright status varies by jurisdiction. Treat as restricted unless verified.

Recap by strand

Strand	Cards total	PDFs archived	Manual queue
psychophysics	26	12	14
action	18	1	17
language	29	8	21
emotion	25	4	21
Total	98	25	73 (rows 3 and 13 are the same paper, true unique = 72)