-
Notifications
You must be signed in to change notification settings - Fork 2
Expand file tree
/
Copy pathvariant_effect_predictor.json
More file actions
77 lines (77 loc) · 4.74 KB
/
Copy pathvariant_effect_predictor.json
File metadata and controls
77 lines (77 loc) · 4.74 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
{
"vep.variant_effect_predictor.json": "(optional) Boolean",
"vep.variant_effect_predictor.freq_freq": "(optional) Int",
"vep.variant_effect_predictor.allow_non_variant": "(optional) Boolean",
"vep.variant_effect_predictor.outputFileName": "String",
"vep.variant_effect_predictor.pluginsDir": "(optional) File",
"vep.variant_effect_predictor.biotype": "(optional) Boolean",
"vep.variant_effect_predictor.pluginFileName": "(optional) String",
"vep.variant_effect_predictor.symbol": "(optional) Boolean",
"vep.variant_effect_predictor.pick_order": "(optional) Array[String]",
"vep.variant_effect_predictor.ccds": "(optional) Boolean",
"vep.variant_effect_predictor.individual": "(optional) String",
"vep.variant_effect_predictor.gvcf": "(optional) Boolean",
"vep.variant_effect_predictor.cacheDir": "File",
"vep.variant_effect_predictor.freq_filter": "(optional) String",
"vep.variant_effect_predictor.check_ref": "(optional) Boolean",
"vep.variant_effect_predictor.no_consequences": "(optional) Boolean",
"vep.variant_effect_predictor.cell_type": "(optional) String",
"vep.variant_effect_predictor.uniprot": "(optional) Boolean",
"vep.variant_effect_predictor.variant_class": "(optional) Boolean",
"vep.variant_effect_predictor.gmaf": "(optional) Boolean",
"vep.variant_effect_predictor.old_maf": "(optional) Boolean",
"vep.variant_effect_predictor.inputFile": "File",
"vep.variant_effect_predictor.maf_esp": "(optional) Boolean",
"vep.variant_effect_predictor.terms": "(optional) String",
"vep.variant_effect_predictor.refFasta": "File",
"vep.variant_effect_predictor.per_gene": "(optional) Boolean",
"vep.variant_effect_predictor.pick_allele": "(optional) Boolean",
"vep.variant_effect_predictor.check_frequency": "(optional) Boolean",
"vep.variant_effect_predictor.regulatory": "(optional) Boolean",
"vep.variant_effect_predictor.tsl": "(optional) Boolean",
"vep.variant_effect_predictor.tab": "(optional) Boolean",
"vep.variant_effect_predictor.minimal": "(optional) Boolean",
"vep.variant_effect_predictor.maf_exac": "(optional) Boolean",
"vep.variant_effect_predictor.polyphen": "(optional) String",
"vep.variant_effect_predictor.pick": "(optional) Boolean",
"vep.variant_effect_predictor.canonical": "(optional) Boolean",
"vep.variant_effect_predictor.buffer_size": "(optional) Int",
"vep.variant_effect_predictor.shift_hgvs": "(optional) Int",
"vep.variant_effect_predictor.vcf": "(optional) Boolean",
"vep.variant_effect_predictor.no_intergenic": "(optional) Boolean",
"vep.variant_effect_predictor.most_severe": "(optional) Boolean",
"vep.variant_effect_predictor.failed": "(optional) Int",
"vep.variant_effect_predictor.refFastaFai": "File",
"vep.variant_effect_predictor.protein": "(optional) Boolean",
"vep.variant_effect_predictor.pubmed": "(optional) Boolean",
"vep.variant_effect_predictor.fork": "(optional) Int",
"vep.variant_effect_predictor.humdiv": "(optional) Boolean",
"vep.variant_effect_predictor.summary": "(optional) Boolean",
"vep.variant_effect_predictor.domains": "(optional) Boolean",
"vep.variant_effect_predictor.flag_pick": "(optional) Boolean",
"vep.variant_effect_predictor.numbers": "(optional) Boolean",
"vep.variant_effect_predictor.freq_pop": "(optional) String",
"vep.variant_effect_predictor.gene_phenotype": "(optional) Boolean",
"vep.variant_effect_predictor.coding_only": "(optional) Boolean",
"vep.variant_effect_predictor.appris": "(optional) Boolean",
"vep.variant_effect_predictor.check_existing": "(optional) Boolean",
"vep.variant_effect_predictor.no_escape": "(optional) Boolean",
"vep.variant_effect_predictor.freq_gt_lt": "(optional) String",
"vep.variant_effect_predictor.check_alleles": "(optional) Boolean",
"vep.variant_effect_predictor.chr": "(optional) Array[String]",
"vep.variant_effect_predictor.keep_csq": "(optional) Boolean",
"vep.variant_effect_predictor.phased": "(optional) Boolean",
"vep.variant_effect_predictor.check_svs": "(optional) Boolean",
"vep.variant_effect_predictor.maf_1kg": "(optional) Boolean",
"vep.variant_effect_predictor.flag_pick_allele": "(optional) Boolean",
"vep.variant_effect_predictor.total_length": "(optional) Boolean",
"vep.variant_effect_predictor.xref_refseq": "(optional) Boolean",
"vep.variant_effect_predictor.filter_common": "(optional) Boolean",
"vep.variant_effect_predictor.hgvs": "(optional) Boolean",
"vep.variant_effect_predictor.pluginArgs": "(optional) Array[String]",
"vep.variant_effect_predictor.allele_number": "(optional) Boolean",
"vep.variant_effect_predictor.vcf_info_field": "(optional) String",
"vep.variant_effect_predictor.plugin": "(optional) String",
"vep.variant_effect_predictor.sift": "(optional) String",
"vep.variant_effect_predictor.everything": "(optional) Boolean"
}