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pfda2dockstore

Export precisionFDA apps to Dockstore

GitHub Repo Creation

This script (createrepo.py) takes your Github token and an organization name and creates a repository in it with a given CWL and Dockerfile. I had to use two libraries here because PyGithub has a bug when creating a release.

pip install PyGithub agithub

python createrepo.py --token $GITHUB_TOKEN --org pfda2dockstore --tool test5 --tag 1.0.0

This will create a test5 repo in Github under the pfda2dockstore organization.

TODO

  • working through tagging, I need to merge with Mike's script

Quay.io Repo Creation

Actions:

  • Given a Quay token, and Github token, and github repo:
    • Initialize a quay repo with the same name from a Dockerfile in the github repo
    • Setup auto build on any new tag or branch update

Dockstore Registration

Need to add this code, Ola is working on this.

TODO

  • Push to existing github/quay.io repos with new versions needs to be supported
  • Better error handling
  • Finish integration with Geet's Dockstore registration piece
  • confirm tag/versions are handled correctly