diff --git a/README.md b/README.md index 449dd10..b37ac5c 100644 --- a/README.md +++ b/README.md @@ -204,6 +204,16 @@ Below is a set of planned study agent services, organized by category. For each **Output:** Directed acyclic graph of known causal/associative relations (LLM + literature discovery). **Validation:** Consistency with cited relations and domain plausibility. +#### `explain_cohort_diagnostics` +**Input:** The user's study intent statement and cohort diagnostics output including code to run and the results files +**Output:** narrative summary / report of the analysis. +**Validation:** Correctly reported summary of the methods and results. + +#### `explain_incidence/estimation/characterization_results` +**Input:** The user's study intent statement and cohort diagnostics and a completed analysis with strategus output folders with code to run and the results files (incidence/estimation/characterization). +**Output:** narrative summary / report of the analysis. +**Validation:** Correctly reported summary of the methods and results. + ### High Level Operational #### `strategus_*` @@ -266,9 +276,9 @@ Below is a set of planned study agent services, organized by category. For each **Validation:** Reproducible execution outputs; summary tied to diagnostics. #### `phenotype_validation_review` -**Input:** Selected phenotype definition(s). -**Output:** Code to sample cases for validation and compare to known phenotype performance. -**Validation:** Sampling logic review; user confirmation before running. +**Input:** Selected phenotype definition (usually for an outcome cohort) and a narrative clinical description with differential diagnoses and known associated factors for validation and to compare to known phenotype performance. +**Output:** code to extract sample cases based on the clinical description and LLM-assessment of a sample (user-specified or random) of cohort records stripped of PHI. +**Validation:** Sampling logic review; user confirmation. #### `cohort_definition_build` **Input:** Phenotype/covariate intent without a cohort definition.