BD Rhapsody produces mtx and tsv files, link to BD page
BD mtx vs cellranger mtx:
Column order are the same: feature,barcode,counts
Difference: rows of the mtx from BD are sorted by feature (ascending) first then by barcode for each feature, but cellranger by barcode ascending first then feature(?)
BD Rhapsody:
1 1 1
1 2 1
1 3 1
2 1 1
2 2 1
3 1 1
cellranger
1 1 1
2 1 1
3 1 1
1 2 1
2 2 1
1 3 1
Example BD dataset can be downloaded here
The error I'm seeing when importing BD matrices is usually something like axis 0 index 565 exceeds matrix dimension 57
BD Rhapsody produces mtx and tsv files, link to BD page
BD mtx vs cellranger mtx:
Column order are the same: feature,barcode,counts
Difference: rows of the mtx from BD are sorted by feature (ascending) first then by barcode for each feature, but cellranger by barcode ascending first then feature(?)
BD Rhapsody:
cellranger
Example BD dataset can be downloaded here
The error I'm seeing when importing BD matrices is usually something like
axis 0 index 565 exceeds matrix dimension 57