@Chunmei2 I do not see "rep" in your scripts for edgeR glm. Did you use "rep" for your analysis? If not, please take a look at my blog, https://knozue.github.io/post/2018/10/01/differential-expression-analysis-with-public-available-sequencing-data.html.
@Chunmei2 I do not see "rep" in your scripts for edgeR glm. Did you use "rep" for your analysis? If not, please take a look at my blog, https://knozue.github.io/post/2018/10/01/differential-expression-analysis-with-public-available-sequencing-data.html.