Example Code For RNA-Seq and Microarray Analysis
- Convert.between.F.and.LOD.R (created 15Apr2014 by Laura Saba)
- code to convert between an F-statistic derived from an ANOVA model and the LOD score typically used in QTL analysis. This is helpful for trouble shooting QTL peaks.
- code to convert from a nominal p-value threshold to a LOD score threshold if you want to be a more liberal in identifying peaks