02-Reconstruction.md

MR Image Reconstruction tools

General Reconstruction

• Berkeley Advanced Reconstruction Toolbox (BART)

  • Website: https://mrirecon.github.io/bart/

• sigpy (Python)

  • Source: https://github.com/mikgroup/sigpy
  • Documentation: https://sigpy.readthedocs.io
  • Example code (on network):
    • /working/larson/apleynes/task_based_recon/sigpy_hello_world/hello_recon.ipynb
    • /working/larson/apleynes/task_based_recon/sigpy_hello_world/hello_recon_with_noise.ipynb

UTE Reconstruction

• UTEMRI_Brain (Internal)
  • Source: https://github.com/LarsonLab/UTEMRI_Brain

EPI Reconstruction

Spiral Reconstruction