Currently the rate coefficients in the photodynamics models depend on the laser power, but a more accurate physical model would have them depend on the illumination irradiance (power per area). This necessitates a model for the illumination profile on the sample. It should
- return the irradiance as a function of x and y (and z?)
- change with the laser power
Furthermore, the fluorophore models will need to be changed to respond to their local irradiance values. Currently they output a fixed number of photons per frame; instead, their photon counts should depend on the irradiance. See https://gist.github.com/hadim/6021276da3d41e246ff688e5a05d07e1 for an example of how to model this in Python.
Currently the rate coefficients in the photodynamics models depend on the laser power, but a more accurate physical model would have them depend on the illumination irradiance (power per area). This necessitates a model for the illumination profile on the sample. It should
Furthermore, the fluorophore models will need to be changed to respond to their local irradiance values. Currently they output a fixed number of photons per frame; instead, their photon counts should depend on the irradiance. See https://gist.github.com/hadim/6021276da3d41e246ff688e5a05d07e1 for an example of how to model this in Python.