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cff-version: 1.2.0
title: David Lab FoodSeq Handbook
message: >-
  If you use this resource, please cite it using the
  metadata from this file.
type: software
authors:
  - given-names: Ashish
    name-particle: M.
    family-names: Subramanian
  - given-names: Sharon
    family-names: Jiang
  - given-names: Dorothy
    name-particle: K.
    family-names: Superdock
  - given-names: Katherine
    family-names: Anderson
  - given-names: Lawrence
    name-particle: A.
    family-names: David
repository-code: https://github.com/LAD-LAB/lad-lab.github.io
url: https://lad-lab.github.io
abstract: >-
  Step-by-step protocols and documentation for the David
  Lab's FoodSeq dietary biomarker pipeline, covering DNA
  extraction, library preparation, sequencing, bioinformatic
  processing with QIIME2 and DADA2, phyloseq creation in R,
  and downstream analyses including diversity metrics,
  relative abundance, and PCA.
keywords:
  - dietary assessment
  - DNA metabarcoding
  - trnL
  - 12SV5
  - FoodSeq
  - bioinformatics
  - phyloseq
license: MIT
version: 1.0.0
doi: 10.5281/zenodo.20174234
identifiers:
  - type: doi
    value: 10.5281/zenodo.20174234
    description: Concept DOI (all versions)