mouse-tracking-runtime/pyproject.toml at main · KumarLabJax/mouse-tracking-runtime · GitHub

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[project]
name = "mouse-tracking"
version = "0.2.6"
description = "Runtime environment for mouse tracking experiments"
requires-python = ">=3.10,<3.11"
packages = ["src/mouse_tracking"]
dependencies = [
  "numpy>=1.26.0,<2.2.0",
  "scipy==1.11.4",
  "pandas==2.0.3",
  "opencv-python-headless==4.8.0.76",
  "imageio[ffmpeg]==2.31.6",
  "pillow==9.4.0",
  "matplotlib==3.7.1",
  "typer>=0.12.4",
  "absl-py==1.4.0",
  "pydantic==2.7.4",
  "networkx==3.3",
  "h5py>=3.11.0",
  "pydantic-settings>=2.10.1",
  "yacs>=0.1.8",
  "plotnine>=0.12.0",
]

[project.optional-dependencies]
# Unified GPU stack (CUDA 12.6 line)
gpu = [
  "tensorflow[and-cuda]==2.20.0",
  "torch==2.6.0",
  "torchvision==0.21.0",
  "torchaudio==2.6.0",
  "nvidia-cusparselt-cu12==0.6.3",
]

# CPU-only convenience for local tests (unchanged idea)
cpu = [
  "tensorflow==2.20.0",
  "torch==2.6.0",
  "torchvision==0.21.0",
  "torchaudio==2.6.0",
]


# ---- uv configuration: point Torch family at cu126 index ----
# ---- uv indexes ----
[[tool.uv.index]]
name = "pypi"
url  = "https://pypi.org/simple"
explicit = false

[[tool.uv.index]]
name = "pytorch-cu126"
url  = "https://download.pytorch.org/whl/cu126"
explicit = true

# ---- uv per-package sources with markers ----
# Use CUDA wheels only when installing the `gpu` extra AND on platforms that can use them.
# Fall back to CPU wheels when installing the `cpu` extra.
[tool.uv.sources]
torch = [
  { index = "pytorch-cu126", marker = "sys_platform == 'linux' and extra == 'gpu'" },
  { index = "pypi", marker = "sys_platform == 'linux' and extra != 'gpu'" },
]
torchvision = [
  { index = "pytorch-cu126", marker = "sys_platform == 'linux' and extra == 'gpu'" },
  { index = "pypi", marker = "sys_platform == 'linux' and extra != 'gpu'" },
]
torchaudio = [
  { index = "pytorch-cu126", marker = "sys_platform == 'linux' and extra == 'gpu'" },
  { index = "pypi", marker = "sys_platform == 'linux' and extra != 'gpu'" },
]

[project.scripts]
mouse-tracking-runtime = "mouse_tracking.cli.main:app"
mouse-tracking = "mouse_tracking.cli.main:app"
mtr = "mouse_tracking.cli.main:app"

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[tool.ruff.lint]
# Enable a selection of rules focused on code quality without being too restrictive
select = [
    "E",    # pycodestyle errors
    "F",    # pyflakes
    "D",    # pydocstyle
    "I",    # isort
    "UP",   # pyupgrade
    "B",    # flake8-bugbear
    "C4",   # flake8-comprehensions
    "SIM",  # flake8-simplify
    "RUF",  # Ruff-specific rules
]

# Ignore specific rules that might be too strict
ignore = [
    "D203",  # one-blank-line-before-class (conflicts with D211)
    "D212",  # multi-line-summary-first-line (conflicts with D213)
    "D107",  # missing docstring in __init__
    "D105",  # missing docstring in magic method
    "D100",  # missing module docstring (optional for smaller scripts)
    "E501",  # line too long (handled by formatter)
]


[tool.ruff.lint.pydocstyle]
convention = "google"

[tool.ruff.lint.per-file-ignores]
"__init__.py" = ["F401"]  # Unused imports in __init__ files
"src/mouse_tracking/cli/*" = ["B008"]  # Ignore Typer style function-call-in-default-argument
"src/mouse_tracking/pytorch_inference/hrnet/*" = ["D"]  # Third-party code

[tool.pytest.ini_options]
addopts = "--benchmark-skip"

[dependency-groups]
dev = [
  {include-group = "lint"},
  {include-group = "test"}
]
test = [
    "pytest>=8.3.5",
    "pytest-benchmark>=5.1.0",
    "pytest-cov>=6.1.1",
]
lint = [
    "ruff>=0.11.2",
]
docs = [
    "mike>=2.1.3",
    "mkdocs-autorefs>=1.4.3",
    "mkdocs-jupyter>=0.25.1",
    "mkdocs-material>=9.6.22",
]