From 6644c8080900b69d7ee2f8ae488d68b96816423a Mon Sep 17 00:00:00 2001 From: Eoin Whelan Date: Thu, 26 Mar 2026 13:13:40 +0000 Subject: [PATCH 1/7] Update ECMWF Atos instructions --- docs/src/Installing.md | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/docs/src/Installing.md b/docs/src/Installing.md index 9b86020..68639e3 100644 --- a/docs/src/Installing.md +++ b/docs/src/Installing.md @@ -95,13 +95,15 @@ Follow the instructions given ini [3.1.1](@ref install-standalone). The compilation requires the following modules to provide system dependencies: ```bash -module load R -module load gdal -module load gproj +module load R/4.4.3 +module load gdal/ module load geos +module load proj ``` +Note: `prgenv/gnu` and `gcc/8.5.0` should be loaded by default. -Tested with current (April 2024) defaults: `R/4.2.2 geos/3.11.1 proj/9.1.1 gdal/3.6.2`. +~~Tested with current (April 2024) defaults: `R/4.2.2 geos/3.11.1 proj/9.1.1 gdal/3.6.2`~~. +Tested with current (April 2026) defaults: `R/4.4.3 gdal/3.10.2 geos/3.13.1 proj/9.4.1 Atos HPC currently does not provide a browser to connect to Shinny applications. However, for those using Virtual Desktop Infrastructure (VDI) provided by ECMWF, one option is to use SOCKS port forwarding from the Linux Virtual Desktop: From d94d733ce56e8212ecaccce91b61535b8eeb7d81 Mon Sep 17 00:00:00 2001 From: Eoin Whelan Date: Thu, 26 Mar 2026 13:16:56 +0000 Subject: [PATCH 2/7] Add Note box for note --- docs/src/Installing.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/docs/src/Installing.md b/docs/src/Installing.md index 68639e3..6ec7ad9 100644 --- a/docs/src/Installing.md +++ b/docs/src/Installing.md @@ -100,7 +100,9 @@ module load gdal/ module load geos module load proj ``` -Note: `prgenv/gnu` and `gcc/8.5.0` should be loaded by default. +> [!NOTE] +> `prgenv/gnu` and `gcc/8.5.0` should be loaded by default. +> If not, they are required and should be loaded. ~~Tested with current (April 2024) defaults: `R/4.2.2 geos/3.11.1 proj/9.1.1 gdal/3.6.2`~~. Tested with current (April 2026) defaults: `R/4.4.3 gdal/3.10.2 geos/3.13.1 proj/9.4.1 From 900ced85e7bc393897b9cb20009c6831a557fbde Mon Sep 17 00:00:00 2001 From: Eoin Whelan Date: Thu, 26 Mar 2026 13:18:07 +0000 Subject: [PATCH 3/7] Remove old versions --- docs/src/Installing.md | 1 - 1 file changed, 1 deletion(-) diff --git a/docs/src/Installing.md b/docs/src/Installing.md index 6ec7ad9..6016937 100644 --- a/docs/src/Installing.md +++ b/docs/src/Installing.md @@ -104,7 +104,6 @@ module load proj > `prgenv/gnu` and `gcc/8.5.0` should be loaded by default. > If not, they are required and should be loaded. -~~Tested with current (April 2024) defaults: `R/4.2.2 geos/3.11.1 proj/9.1.1 gdal/3.6.2`~~. Tested with current (April 2026) defaults: `R/4.4.3 gdal/3.10.2 geos/3.13.1 proj/9.4.1 Atos HPC currently does not provide a browser to connect to Shinny applications. However, for those using Virtual Desktop Infrastructure (VDI) provided by ECMWF, one option is to use SOCKS port forwarding from the Linux Virtual Desktop: From 664b5924dad387d0b4928e4f53563c7045c4a0c1 Mon Sep 17 00:00:00 2001 From: Eoin Whelan Date: Thu, 26 Mar 2026 13:21:48 +0000 Subject: [PATCH 4/7] Let's be omre specific --- docs/src/Installing.md | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/docs/src/Installing.md b/docs/src/Installing.md index 6016937..5a72b07 100644 --- a/docs/src/Installing.md +++ b/docs/src/Installing.md @@ -95,14 +95,17 @@ Follow the instructions given ini [3.1.1](@ref install-standalone). The compilation requires the following modules to provide system dependencies: ```bash +module purge +module load prgenv/gnu +module unload gcc +module load gcc/8.5.0 module load R/4.4.3 -module load gdal/ -module load geos -module load proj +module load gdal/3.10.2 +module load geos/3.13.1 +module load proj/9.4.1 ``` > [!NOTE] > `prgenv/gnu` and `gcc/8.5.0` should be loaded by default. -> If not, they are required and should be loaded. Tested with current (April 2026) defaults: `R/4.4.3 gdal/3.10.2 geos/3.13.1 proj/9.4.1 From 4a6163dacf48da14892f55886f6bdb12583092f9 Mon Sep 17 00:00:00 2001 From: Eoin Whelan Date: Thu, 26 Mar 2026 13:23:03 +0000 Subject: [PATCH 5/7] Fix minimum R version required --- docs/src/Installing.md | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/docs/src/Installing.md b/docs/src/Installing.md index 5a72b07..e7083e6 100644 --- a/docs/src/Installing.md +++ b/docs/src/Installing.md @@ -4,10 +4,8 @@ Use the `install` script to install the `R` libraries needed. The main system requirements are: - A Linux operating system -- A working `R (>= 4.0.5)` interpreter - +- A working `R (>= 4.4.0)` interpreter - `python (>= 3.6.7)` - - Internet connection Instructions for the various installation modes are given in From f80f76f80475a02e8b88aa2f301970f473791511 Mon Sep 17 00:00:00 2001 From: Eoin Whelan Date: Thu, 26 Mar 2026 13:26:24 +0000 Subject: [PATCH 6/7] Update Change Log --- CHANGELOG.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/CHANGELOG.md b/CHANGELOG.md index c978b0e..67005f8 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,6 +5,8 @@ The format is based on [Keep a Changelog](http://keepachangelog.com) and this project adheres to [Semantic Versioning](http://semver.org). ## [Unreleased] +### Fixed +- COrrect ECMWF documentation [!49](https://github.com/Hirlam/obsmon/pull/49) ### Added - Add GitHub Action to test installation on Ubuntu 24.04 [!48](https://github.com/Hirlam/obsmon/pull/48) ## [4.5.3] 2026-03-24 From 9d7e74fce5c581d42c4a4e117aa7bdcb48f14264 Mon Sep 17 00:00:00 2001 From: Eoin Whelan Date: Thu, 26 Mar 2026 13:34:00 +0000 Subject: [PATCH 7/7] Correct typo --- CHANGELOG.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 67005f8..839021d 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -6,7 +6,7 @@ and this project adheres to [Semantic Versioning](http://semver.org). ## [Unreleased] ### Fixed -- COrrect ECMWF documentation [!49](https://github.com/Hirlam/obsmon/pull/49) +- Correct ECMWF documentation [!49](https://github.com/Hirlam/obsmon/pull/49) ### Added - Add GitHub Action to test installation on Ubuntu 24.04 [!48](https://github.com/Hirlam/obsmon/pull/48) ## [4.5.3] 2026-03-24