From ff1dfe472888d9b755df68522f8dcdc3d4ff7477 Mon Sep 17 00:00:00 2001 From: Chin Hao <60098604+ch99l@users.noreply.github.com> Date: Wed, 23 Sep 2026 10:05:18 +0800 Subject: [PATCH] fix typed bug (#45) --- CHANGELOG.md | 5 +++++ main.nf | 2 +- nextflow.config | 2 +- 3 files changed, 7 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index aed2e56..4b0cac1 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,11 @@ This file contains all notable changes to Bambu-Pipe. --- +## [v0.10.2] - 2026-09-23 + +### Fixed +- `--output_dir` is now typed as `String` instead of `Path`; typed `Path` params must already exist, so a new output directory failed validation when the trace, timeline, report and DAG reports (which create it first) were disabled + ## [v0.10.1] - 2026-08-26 ### Added diff --git a/main.nf b/main.nf index dbe2b2c..9b69d40 100644 --- a/main.nf +++ b/main.nf @@ -31,7 +31,7 @@ params { input: Path genome: Path annotation: Path - output_dir: Path + output_dir: String chemistry: String? technology: String? bam_only: Boolean diff --git a/nextflow.config b/nextflow.config index 725fc66..690c916 100644 --- a/nextflow.config +++ b/nextflow.config @@ -2,7 +2,7 @@ manifest { name = 'Bambu-Pipe' description = 'Context-aware transcript quantification from long-read single-cell and spatial transcriptomics data' author = 'Andre Sim, Chin Hao Lee, Min Hao Ling' - version = 'v0.10.1' + version = 'v0.10.2' mainScript = 'main.nf' nextflowVersion = '!>=26.04.0' }