pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
    <modelVersion>4.0.0</modelVersion>

    <groupId>org.phenopackets</groupId>
    <artifactId>phenopacket-schema</artifactId>
    <version>1.0.0</version>
    <packaging>jar</packaging>

    <name>phenopacket-schema</name>
    <description>A Protobuf schema for capturing clinical phenotypes</description>
    <url>http://phenopackets.org</url>
    <inceptionYear>2018</inceptionYear>

    <licenses>
        <license>
            <name>The BSD 3-Clause License</name>
            <url>https://opensource.org/licenses/BSD-3-Clause</url>
            <distribution>repo</distribution>
        </license>
    </licenses>

    <developers>
        <developer>
            <name>Chris Mungall</name>
            <email>cjmungall@lbl.gov</email>
            <organization>Monarch Initiative</organization>
            <organizationUrl>http://monarchinitiative.org</organizationUrl>
        </developer>
        <developer>
            <name>Jules Jacobsen</name>
            <email>j.jacobsen@qmul.ac.uk</email>
            <organization>Queen Mary University of London</organization>
            <organizationUrl>http://qmul.ac.uk</organizationUrl>
        </developer>
    </developers>

    <scm>
        <connection>scm:git:https://github.com/phenopackets/phenopacket-schema.git</connection>
        <developerConnection>scm:git:ssh://github.com:phenopackets/phenopacket-schema.git</developerConnection>
        <url>https://github.com/phenopackets/phenopacket-schema</url>
        <tag>HEAD</tag>
    </scm>

    <ciManagement>
        <system>Travis CI</system>
        <url>https://travis-ci.org/phenopackets/phenopacket-schema</url>
    </ciManagement>

    <properties>
        <project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
        <java.version>11</java.version>
        <protobuf.version>3.14.0</protobuf.version>
        <fhir.version>3.8.0</fhir.version>
    </properties>

    <distributionManagement>
        <snapshotRepository>
            <id>ossrh</id>
            <url>https://oss.sonatype.org/content/repositories/snapshots</url>
        </snapshotRepository>
    </distributionManagement>

    <profiles>
        <profile>
            <id>release-sign-artifacts</id>
            <activation>
                <property>
                    <name>performRelease</name>
                    <value>true</value>
                </property>
            </activation>
            <build>
                <plugins>
                    <plugin>
                        <groupId>org.apache.maven.plugins</groupId>
                        <artifactId>maven-gpg-plugin</artifactId>
                        <version>1.6</version>
                        <executions>
                            <execution>
                                <id>sign-artifacts</id>
                                <phase>verify</phase>
                                <goals>
                                    <goal>sign</goal>
                                </goals>
                            </execution>
                        </executions>
                    </plugin>
                </plugins>
            </build>
        </profile>
    </profiles>

    <dependencies>
        <dependency>
            <groupId>com.google.protobuf</groupId>
            <artifactId>protobuf-java</artifactId>
            <version>${protobuf.version}</version>
        </dependency>

        <!-- TEST DEPENDENCIES -->
        <dependency>
            <groupId>com.google.protobuf</groupId>
            <artifactId>protobuf-java-util</artifactId>
            <version>${protobuf.version}</version>
            <scope>test</scope>
        </dependency>

        <!--JSON + YAML deps-->
        <dependency>
            <groupId>com.fasterxml.jackson.core</groupId>
            <artifactId>jackson-databind</artifactId>
            <version>2.9.10.7</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>com.fasterxml.jackson.dataformat</groupId>
            <artifactId>jackson-dataformat-yaml</artifactId>
            <version>2.9.0</version>
            <scope>test</scope>
        </dependency>

        <!-- logging -->
        <dependency>
            <groupId>org.slf4j</groupId>
            <artifactId>slf4j-api</artifactId>
            <version>1.7.25</version>
            <scope>test</scope>
        </dependency>

        <!-- FHIR -->
        <dependency>
            <groupId>ca.uhn.hapi.fhir</groupId>
            <artifactId>hapi-fhir-base</artifactId>
            <version>${fhir.version}</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>ca.uhn.hapi.fhir</groupId>
            <artifactId>hapi-fhir-structures-r4</artifactId>
            <version>${fhir.version}</version>
            <scope>test</scope>
        </dependency>
        <!-- JUnit -->
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-api</artifactId>
            <version>5.3.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.junit.jupiter</groupId>
            <artifactId>junit-jupiter-engine</artifactId>
            <version>5.3.0</version>
            <scope>test</scope>
        </dependency>
        <dependency>
            <groupId>org.hamcrest</groupId>
            <artifactId>hamcrest-core</artifactId>
            <version>1.3</version>
            <scope>test</scope>
        </dependency>
    </dependencies>

    <build>
        <extensions>
            <extension>
                <groupId>kr.motd.maven</groupId>
                <artifactId>os-maven-plugin</artifactId>
                <version>1.6.0</version>
            </extension>
        </extensions>
        <plugins>
            <plugin>
                <groupId>org.xolstice.maven.plugins</groupId>
                <artifactId>protobuf-maven-plugin</artifactId>
                <version>0.6.1</version>
                <extensions>true</extensions>
                <configuration>
                    <protocArtifact>com.google.protobuf:protoc:${protobuf.version}:exe:${os.detected.classifier}</protocArtifact>
                </configuration>
                <executions>
                    <execution>
                        <goals>
                            <goal>compile</goal>
                            <goal>test-compile</goal>
                            <goal>compile-python</goal>
                            <goal>test-compile-python</goal>
                            <goal>compile-cpp</goal>
                            <goal>test-compile-cpp</goal>
                            <goal>compile-js</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.sonatype.plugins</groupId>
                <artifactId>nexus-staging-maven-plugin</artifactId>
                <version>1.6.7</version>
                <extensions>true</extensions>
                <configuration>
                    <serverId>ossrh</serverId>
                    <nexusUrl>https://oss.sonatype.org/</nexusUrl>
                    <autoReleaseAfterClose>true</autoReleaseAfterClose>
                </configuration>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-compiler-plugin</artifactId>
                <version>3.8.0</version>
                <configuration>
                    <source>${java.version}</source>
                    <target>${java.version}</target>
                </configuration>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-surefire-plugin</artifactId>
                <version>2.21.0</version>
                <configuration>
                    <excludes>
                        <exclude>**/FooTest.java</exclude>
                    </excludes>
                </configuration>
            </plugin>

            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-source-plugin</artifactId>
                <version>3.0.1</version>
                <executions>
                    <execution>
                        <id>attach-sources</id>
                        <phase>verify</phase>
                        <goals>
                            <goal>jar-no-fork</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
            <plugin>
                <groupId>org.apache.maven.plugins</groupId>
                <artifactId>maven-javadoc-plugin</artifactId>
                <version>3.1.0</version>
                <configuration>
                    <javadocExecutable>${java.home}/bin/javadoc</javadocExecutable>
                    <doclint>none</doclint>
                    <quiet>true</quiet>
                </configuration>
                <executions>
                    <execution>
                        <id>attach-javadocs</id>
                        <goals>
                            <goal>jar</goal>
                        </goals>
                    </execution>
                </executions>
            </plugin>
        </plugins>
    </build>
</project>