meta.yaml

package:
  name: pcsac       
  version: "1.0.0"      

source:
  path: ./

build:
  number: 0                  
  script: |
    mkdir build
    cd build
    cmake .. -DCMAKE_INSTALL_PREFIX=$PREFIX
    make
    make install             

requirements:
  build:
    - gcc 12.2                
    - cmake >=2.6             
    - make  
    - eigen 3.4               
  host:
    - boost >=1.81            
    - eigen 3.4              
  run:
    - python >=3.10           
    - boost >=1.81
    - eigen 3.4               

about:
  home: https://github.com/G2Lab/pCSAC  
  license: Columbia University                                    
  summary: "A C-based library for generating high-resolution Hi-C matrices from low-resolution data using probabilistic methods."
  description: |
    A C-based library implementing pC-SAC (probabilistically Constrained Self-Avoiding Chromatin), a computational method for generating high-resolution Hi-C matrices from low-resolution input. By employing adaptive importance sampling and sequential Monte Carlo techniques, this library produces ensembles of 3D chromatin chains that satisfy physical constraints derived from low-resolution Hi-C data, enabling accurate and biologically meaningful reconstructions of chromatin structure.