From db18e28b56f67c1a7b567a12ad546c6c559c5c75 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Thu, 2 Jul 2026 09:53:11 +0100 Subject: [PATCH 01/26] Update auth token check. --- src/authorizer/egi_authorizer.py | 30 ++++++++++++++++++++---------- 1 file changed, 20 insertions(+), 10 deletions(-) diff --git a/src/authorizer/egi_authorizer.py b/src/authorizer/egi_authorizer.py index b58b100..ad31616 100644 --- a/src/authorizer/egi_authorizer.py +++ b/src/authorizer/egi_authorizer.py @@ -5,7 +5,7 @@ from esgf_core_utils.models.auth import Authorizer from esgf_core_utils.models.exceptions import InvalidTokenAudienceException from esgf_core_utils.models.kafka.events import RequesterData -from fastapi import Request +from fastapi import HTTPException, Request from starlette.middleware.base import BaseHTTPMiddleware from settings import settings @@ -45,20 +45,30 @@ async def dispatch(self, request: Request, call_next): "Post request to %s", settings.client.introspection_endpoint, ) - response = await client.post( - settings.client.introspection_endpoint, - headers={"Content-type": "application/x-www-form-urlencoded"}, - data=f"token={request.headers.get('authorization')[7:]}", - auth=auth, - timeout=5, - ) - response.raise_for_status() + if token := request.headers.get("authorization", "").removeprefix( + "Bearer " + ): + response = await client.post( + settings.client.introspection_endpoint, + headers={"Content-type": "application/x-www-form-urlencoded"}, + data=f"token={request.headers.get('authorization', '').removeprefix('Bearer ')}", + auth=auth, + timeout=5, + ) + response.raise_for_status() + + else: + raise HTTPException( + status_code=401, detail="Missing or invalid bearer token" + ) token_info = response.json() logger.debug("Token info: %s", token_info) - if request.headers["host"] not in [urlparse(aud).hostname for aud in token_info["aud"]]: + if request.headers["host"] not in [ + urlparse(aud).hostname for aud in token_info["aud"] + ]: raise InvalidTokenAudienceException( token_audience=request.headers["host"], expected_audience=", ".join(token_info["aud"]), From f2b0708cd34b6fff8f003b6552c5b1ea55dfc9b6 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Thu, 2 Jul 2026 09:54:31 +0100 Subject: [PATCH 02/26] Use walrus. --- src/authorizer/egi_authorizer.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/authorizer/egi_authorizer.py b/src/authorizer/egi_authorizer.py index ad31616..b562776 100644 --- a/src/authorizer/egi_authorizer.py +++ b/src/authorizer/egi_authorizer.py @@ -51,7 +51,7 @@ async def dispatch(self, request: Request, call_next): response = await client.post( settings.client.introspection_endpoint, headers={"Content-type": "application/x-www-form-urlencoded"}, - data=f"token={request.headers.get('authorization', '').removeprefix('Bearer ')}", + data=f"token={token}", auth=auth, timeout=5, ) From 1f480713dc281e54a3df21cc2687e88bba11a35c Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Mon, 13 Jul 2026 08:46:08 +0100 Subject: [PATCH 03/26] Add debug log to create item. --- src/client.py | 41 +++++++++++++++++++++++++++++++---------- 1 file changed, 31 insertions(+), 10 deletions(-) diff --git a/src/client.py b/src/client.py index 4df0170..5cf5ff8 100644 --- a/src/client.py +++ b/src/client.py @@ -27,11 +27,11 @@ ) from esgf_core_utils.models.kafka.producer import KafkaProducer from fastapi import Request, Response, status +from pydantic import TypeAdapter from stac_fastapi.extensions.transaction import BaseTransactionsClient from stac_fastapi.extensions.transaction.request import PartialItem, PatchOperation from stac_fastapi.types.stac import Collection from stac_pydantic.item import Item -from pydantic import TypeAdapter from settings import settings from utils import ( @@ -69,7 +69,9 @@ def allowed_groups(self, properties, acp) -> list: return groups return [] - def globus_authorize(self, item: Item, request: Request, collection_id: str) -> dict: + def globus_authorize( + self, item: Item, request: Request, collection_id: str + ) -> dict: properties = item.properties if item.collection != collection_id: @@ -77,7 +79,9 @@ def globus_authorize(self, item: Item, request: Request, collection_id: str) -> if getattr(properties, "project", None) != collection_id: raise ValueError("Item project must match path collection_id") - allowed_groups = self.allowed_groups(properties, settings.client.access_control_policy) + allowed_groups = self.allowed_groups( + properties, settings.client.access_control_policy + ) allowed_groups_uuid = [g.get("uuid") for g in allowed_groups] authorizer = request.state.authorizer @@ -94,7 +98,9 @@ def globus_authorize(self, item: Item, request: Request, collection_id: str) -> } ) if not authorized_identities: - raise MissingPermissionException(permission_type="globus", target=collection_id) + raise MissingPermissionException( + permission_type="globus", target=collection_id + ) requester_data = RequesterData( client_id=token_info.get("client_id"), @@ -155,7 +161,9 @@ def authorize( ) -> Auth: if settings.authorizer == "globus": - return self.globus_authorize(collection_id=collection_id, item=item, request=request) + return self.globus_authorize( + collection_id=collection_id, item=item, request=request + ) else: return self.egi_authorize( collection_id=collection_id, @@ -173,6 +181,7 @@ async def create_item( request: Request, ) -> Optional[Union[Item, Response, None]]: + logger.debug("CREATE REQUEST: %s", item) headers = request.headers event_id = uuid.uuid4().hex @@ -193,7 +202,9 @@ async def create_item( item_extensions = item.stac_extensions if item.stac_extensions else [] try: - item_extensions = validate_extensions(collection_id=collection_id, item_extensions=item_extensions) + item_extensions = validate_extensions( + collection_id=collection_id, item_extensions=item_extensions + ) validate_post( item_id=item.id, item=item, @@ -225,7 +236,9 @@ async def create_item( data = Data(type="STAC", payload=payload) - publisher = Publisher(package=user_agent[0], version=user_agent[1] if len(user_agent) > 1 else "") + publisher = Publisher( + package=user_agent[0], version=user_agent[1] if len(user_agent) > 1 else "" + ) metadata = Metadata( auth=auth, @@ -270,7 +283,11 @@ async def patch_item( ) -> Item | Response | None: logger.info("PATCH REQUEST: %s", patch) - item = operation_to_partial_item(collection_id=collection_id, operations=patch) if isinstance(patch, list) else patch + item = ( + operation_to_partial_item(collection_id=collection_id, operations=patch) + if isinstance(patch, list) + else patch + ) headers = request.headers.get("headers", {}) @@ -289,7 +306,9 @@ async def patch_item( item_extensions = item.stac_extensions if item.stac_extensions else [] try: - item_extensions = validate_extensions(collection_id=collection_id, item_extensions=item_extensions) + item_extensions = validate_extensions( + collection_id=collection_id, item_extensions=item_extensions + ) validate_patch( item_id=item_id, @@ -322,7 +341,9 @@ async def patch_item( data = Data(type="STAC", payload=payload) - publisher = Publisher(package=user_agent[0], version=user_agent[1] if len(user_agent) > 1 else "") + publisher = Publisher( + package=user_agent[0], version=user_agent[1] if len(user_agent) > 1 else "" + ) metadata = Metadata( auth=auth, event_id=event_id, From a4248830f8dded45fb7467db0db3b01b5b68b3bb Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Mon, 13 Jul 2026 09:24:04 +0100 Subject: [PATCH 04/26] Add timeout setting for client. --- src/authorizer/egi_authorizer.py | 9 +++++---- src/settings/ceda.py | 6 +++++- 2 files changed, 10 insertions(+), 5 deletions(-) diff --git a/src/authorizer/egi_authorizer.py b/src/authorizer/egi_authorizer.py index b562776..f9aac5a 100644 --- a/src/authorizer/egi_authorizer.py +++ b/src/authorizer/egi_authorizer.py @@ -17,8 +17,8 @@ Authorizer type: FastAPI Middleware Event payload: Token Token source: Authorization - Token validation: ^Bearer\s[^\s]+$ # noqa: W605 - ^Bearer\s[0-9A-Za-z]+$ for access tokens issued by Globus Auth (?) # noqa: W605 + Token validation: ^Bearer\\s[^\\s]+$ # noqa: W605 + ^Bearer\\s[0-9A-Za-z]+$ for access tokens issued by Globus Auth (?) # noqa: W605 Authorization caching: 300 seconds """ @@ -40,7 +40,9 @@ async def dispatch(self, request: Request, call_next): password=settings.client.client_secret, ) - async with httpx.AsyncClient(timeout=5.0, verify=False) as client: + async with httpx.AsyncClient( + timeout=settings.client.timeout, verify=False + ) as client: logger.debug( "Post request to %s", settings.client.introspection_endpoint, @@ -53,7 +55,6 @@ async def dispatch(self, request: Request, call_next): headers={"Content-type": "application/x-www-form-urlencoded"}, data=f"token={token}", auth=auth, - timeout=5, ) response.raise_for_status() diff --git a/src/settings/ceda.py b/src/settings/ceda.py index fe55661..1c644cf 100644 --- a/src/settings/ceda.py +++ b/src/settings/ceda.py @@ -9,7 +9,11 @@ class CEDAClientSettings(BaseModel): client_id: str client_secret: str token_url: str = "https://aai.egi.eu/auth/realms/egi/protocol/openid-connect/token" - introspection_endpoint: str = "https://aai.egi.eu/auth/realms/egi/protocol/openid-connect/token/introspect" + introspection_endpoint: str = ( + "https://aai.egi.eu/auth/realms/egi/protocol/openid-connect/token/introspect" + ) + timeout: float = 5.0 + regex: str = ( r"urn\:mace\:egi\.eu\:group\:esgf.vo.egi.eu\:(?P[^:]*)\:(?P[^:]*)" r"(\:institution\:(?P[^:]*))?\:role=(?P[^:]*)#aai\.egi\.eu" From a3fe1ba6a4b8f4c9349dcaecdae7645b83da2ce7 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Mon, 13 Jul 2026 10:22:57 +0100 Subject: [PATCH 05/26] Dump to item to json. --- src/client.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/client.py b/src/client.py index 5cf5ff8..f869776 100644 --- a/src/client.py +++ b/src/client.py @@ -181,7 +181,7 @@ async def create_item( request: Request, ) -> Optional[Union[Item, Response, None]]: - logger.debug("CREATE REQUEST: %s", item) + logger.debug("CREATE REQUEST: %s", item.model_dump_json()) headers = request.headers event_id = uuid.uuid4().hex From 57a932f10d4f21d16e2688394e5b4143e3c41675 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Tue, 14 Jul 2026 08:49:22 +0100 Subject: [PATCH 06/26] Update CORDEX extension version. --- src/settings/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/settings/__init__.py b/src/settings/__init__.py index ac551ef..5e8f184 100644 --- a/src/settings/__init__.py +++ b/src/settings/__init__.py @@ -54,7 +54,7 @@ "CORDEX-CMIP6": { "CORDEX-CMIP6": { "regex": [r"https:\/\/esgf\.github\.io\/stac-transaction-api\/cordex-cmip6\/v[0-9]\.[0-9]\.[0-9]/schema\.json"], - "default": "https://esgf.github.io/stac-transaction-api/cordex-cmip6/v3.1.2/schema.json", + "default": "https://esgf.github.io/stac-transaction-api/cordex-cmip6/v1.2.1/schema.json", }, "alternate_assets": { "regex": [r"https:\/\/stac-extensions\.github\.io\/alternate-assets\/v[0-9]\.[0-9]\.[0-9]\/schema\.json"], From 5a9052745300741fe67059e737f7e2079b10a834 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Fri, 17 Jul 2026 09:25:32 +0100 Subject: [PATCH 07/26] Update schema versions. --- src/settings/__init__.py | 109 ++++++++++++++++++++++++++++++++------- 1 file changed, 90 insertions(+), 19 deletions(-) diff --git a/src/settings/__init__.py b/src/settings/__init__.py index 5e8f184..f45f412 100644 --- a/src/settings/__init__.py +++ b/src/settings/__init__.py @@ -1,6 +1,7 @@ import os -from typing import Literal import re +from typing import Literal + from pydantic_settings import BaseSettings, SettingsConfigDict if os.environ.get("TRANSACTION_AUTHORIZER") == "egi": @@ -11,71 +12,141 @@ DEFAULT_EXTENSIONS = { "CMIP6": { "CMIP6": { - "regex": [r"https:\/\/esgf\.github\.io\/stac-transaction-api\/cmip6\/v[0-9]\.[0-9]\.[0-9]/schema\.json"], - "default": "https://esgf.github.io/stac-transaction-api/cmip6/v3.0.4/schema.json", + "regex": [ + r"https://esgf\.github\.io/stac-transaction-api/cmip6/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], + "default": "https://esgf.github.io/stac-transaction-api/cmip6/v2.0.0/schema.json", }, "alternate_assets": { - "regex": [r"https:\/\/stac-extensions\.github\.io\/alternate-assets\/v[0-9]\.[0-9]\.[0-9]\/schema\.json"], + "regex": [ + r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", }, "file": { - "regex": [r"https:\/\/stac-extensions\.github\.io\/file\/v[0-9]\.[0-9]\.[0-9]/schema\.json"], + "regex": [ + r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], "default": "https://stac-extensions.github.io/file/v2.1.0/schema.json", }, }, "CMIP6Plus": { "CMIP6Plus": { - "regex": [r"https:\/\/esgf\.github\.io\/stac-transaction-api\/cmip6plus\/v[0-9]\.[0-9]\.[0-9]/schema\.json"], - "default": "https://esgf.github.io/stac-transaction-api/cmip6plus/v1.0.4/schema.json", + "regex": [ + r"https://esgf\.github\.io/stac-transaction-api/cmip6plus/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], + "default": "https://esgf.github.io/stac-transaction-api/cmip6plus/v2.0.1/schema.json", }, "alternate_assets": { - "regex": [r"https:\/\/stac-extensions\.github\.io\/alternate-assets\/v[0-9]\.[0-9]\.[0-9]\/schema\.json"], + "regex": [ + r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", }, "file": { - "regex": [r"https:\/\/stac-extensions\.github\.io\/file\/v[0-9]\.[0-9]\.[0-9]/schema\.json"], + "regex": [ + r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], "default": "https://stac-extensions.github.io/file/v2.1.0/schema.json", }, }, "CMIP7": { "CMIP7": { - "regex": [r"https:\/\/esgf\.github\.io\/stac-transaction-api\/cmip7\/v[0-9]\.[0-9]\.[0-9]\/schema\.json"], - "default": "https://esgf.github.io/stac-transaction-api/cmip7/v1.0.0/schema.json", + "regex": [ + r"https://esgf\.github\.io/stac-transaction-api/cmip7/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], + "default": "https://esgf.github.io/stac-transaction-api/cmip7/v1.2.9/schema.json", }, "alternate_assets": { - "regex": [r"https:\/\/stac-extensions\.github\.io\/alternate-assets\/v[0-9]\.[0-9]\.[0-9]\/schema\.json"], + "regex": [ + r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", }, "file": { - "regex": [r"https:\/\/stac-extensions\.github\.io\/file\/v[0-9]\.[0-9]\.[0-9]/schema\.json"], + "regex": [ + r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], "default": "https://stac-extensions.github.io/file/v2.1.0/schema.json", }, }, + "INPUT4MIP": { + "INPUT4MIP": { + "regex": [ + r"https://esgf\.github\.io/stac-transaction-api/input4mips/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], + "default": "https://esgf.github.io/stac-transaction-api/input4mips/v1.2.9/schema.json", + }, + "alternate_assets": { + "regex": [ + r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], + "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", + }, + "file": { + "regex": [ + r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], + "default": "https://stac-extensions.github.io/file/v3.0.0/schema.json", + }, + }, "CORDEX-CMIP6": { "CORDEX-CMIP6": { - "regex": [r"https:\/\/esgf\.github\.io\/stac-transaction-api\/cordex-cmip6\/v[0-9]\.[0-9]\.[0-9]/schema\.json"], + "regex": [ + r"https://esgf\.github\.io/stac-transaction-api/cordex-cmip6/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], "default": "https://esgf.github.io/stac-transaction-api/cordex-cmip6/v1.2.1/schema.json", }, "alternate_assets": { - "regex": [r"https:\/\/stac-extensions\.github\.io\/alternate-assets\/v[0-9]\.[0-9]\.[0-9]\/schema\.json"], + "regex": [ + r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", }, "file": { - "regex": [r"https:\/\/stac-extensions\.github\.io\/file\/v[0-9]\.[0-9]\.[0-9]/schema\.json"], + "regex": [ + r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], "default": "https://stac-extensions.github.io/file/v2.1.0/schema.json", }, }, "obs4MIPs": { "obs4MIPs": { - "regex": [r"https:\/\/esgf\.github\.io\/stac-transaction-api\/obs4mips\/v[0-9]\.[0-9]\.[0-9]/schema\.json"], + "regex": [ + r"https://esgf\.github\.io/stac-transaction-api/obs4mips/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], "default": "https://esgf.github.io/stac-transaction-api/obs4mips/v1.0.0/schema.json", }, "alternate_assets": { - "regex": [r"https:\/\/stac-extensions\.github\.io\/alternate-assets\/v[0-9]\.[0-9]\.[0-9]\/schema\.json"], + "regex": [ + r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], + "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", + }, + "file": { + "regex": [ + r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], + "default": "https://stac-extensions.github.io/file/v2.1.0/schema.json", + }, + }, + "OBS4REF": { + "OBS4REF": { + "regex": [ + r"https://esgf\.github\.io/stac-transaction-api/obs4ref/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], + "default": "https://esgf.github.io/stac-transaction-api/obs4ref/v1.0.1/schema.json", + }, + "alternate_assets": { + "regex": [ + r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", }, "file": { - "regex": [r"https:\/\/stac-extensions\.github\.io\/file\/v[0-9]\.[0-9]\.[0-9]/schema\.json"], + "regex": [ + r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" + ], "default": "https://stac-extensions.github.io/file/v2.1.0/schema.json", }, }, From 3c63b00abb55bf2798ef924ea747180000a9d4f7 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Wed, 22 Jul 2026 08:46:28 +0100 Subject: [PATCH 08/26] Increase read timeout for EGI checkin. --- src/authorizer/egi_authorizer.py | 6 +++++- src/settings/ceda.py | 11 ++++++++++- 2 files changed, 15 insertions(+), 2 deletions(-) diff --git a/src/authorizer/egi_authorizer.py b/src/authorizer/egi_authorizer.py index f9aac5a..f12c20a 100644 --- a/src/authorizer/egi_authorizer.py +++ b/src/authorizer/egi_authorizer.py @@ -41,7 +41,11 @@ async def dispatch(self, request: Request, call_next): ) async with httpx.AsyncClient( - timeout=settings.client.timeout, verify=False + timeout=httpx.Timeout( + connect=settings.timeout.connect, + read=settings.timeout.read, + ), + verify=False, ) as client: logger.debug( "Post request to %s", diff --git a/src/settings/ceda.py b/src/settings/ceda.py index 1c644cf..1bc33ac 100644 --- a/src/settings/ceda.py +++ b/src/settings/ceda.py @@ -1,6 +1,15 @@ from pydantic import BaseModel +class TimeoutSettings(BaseModel): + """ + Timeout settings + """ + + connect: float = 5.0 + read: float = 15.0 + + class CEDAClientSettings(BaseModel): """ CEDA settings @@ -12,7 +21,7 @@ class CEDAClientSettings(BaseModel): introspection_endpoint: str = ( "https://aai.egi.eu/auth/realms/egi/protocol/openid-connect/token/introspect" ) - timeout: float = 5.0 + timeout: TimeoutSettings regex: str = ( r"urn\:mace\:egi\.eu\:group\:esgf.vo.egi.eu\:(?P[^:]*)\:(?P[^:]*)" From 867c9313689953df29723475a5dcab14ace8f8e1 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Wed, 22 Jul 2026 09:04:03 +0100 Subject: [PATCH 09/26] Add default timeout. --- src/authorizer/egi_authorizer.py | 4 ++-- src/settings/ceda.py | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/src/authorizer/egi_authorizer.py b/src/authorizer/egi_authorizer.py index f12c20a..6f7eb8d 100644 --- a/src/authorizer/egi_authorizer.py +++ b/src/authorizer/egi_authorizer.py @@ -42,8 +42,8 @@ async def dispatch(self, request: Request, call_next): async with httpx.AsyncClient( timeout=httpx.Timeout( - connect=settings.timeout.connect, - read=settings.timeout.read, + connect=settings.client.timeout.connect, + read=settings.client.timeout.read, ), verify=False, ) as client: diff --git a/src/settings/ceda.py b/src/settings/ceda.py index 1bc33ac..38d5201 100644 --- a/src/settings/ceda.py +++ b/src/settings/ceda.py @@ -21,7 +21,7 @@ class CEDAClientSettings(BaseModel): introspection_endpoint: str = ( "https://aai.egi.eu/auth/realms/egi/protocol/openid-connect/token/introspect" ) - timeout: TimeoutSettings + timeout: TimeoutSettings = TimeoutSettings() regex: str = ( r"urn\:mace\:egi\.eu\:group\:esgf.vo.egi.eu\:(?P[^:]*)\:(?P[^:]*)" From 02843f674b047352f966dd774d920d9573122546 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Wed, 22 Jul 2026 09:39:50 +0100 Subject: [PATCH 10/26] Hard code timeout. --- src/authorizer/egi_authorizer.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/authorizer/egi_authorizer.py b/src/authorizer/egi_authorizer.py index 6f7eb8d..72e80f5 100644 --- a/src/authorizer/egi_authorizer.py +++ b/src/authorizer/egi_authorizer.py @@ -42,8 +42,8 @@ async def dispatch(self, request: Request, call_next): async with httpx.AsyncClient( timeout=httpx.Timeout( - connect=settings.client.timeout.connect, - read=settings.client.timeout.read, + connect=10.0, + read=30.0, ), verify=False, ) as client: From 3707b2f28efbf4b9c150b4d6c4e58ec1ca0364fa Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Wed, 22 Jul 2026 09:41:34 +0100 Subject: [PATCH 11/26] Add timeout default. --- src/authorizer/egi_authorizer.py | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/src/authorizer/egi_authorizer.py b/src/authorizer/egi_authorizer.py index 72e80f5..65cf5ab 100644 --- a/src/authorizer/egi_authorizer.py +++ b/src/authorizer/egi_authorizer.py @@ -42,8 +42,9 @@ async def dispatch(self, request: Request, call_next): async with httpx.AsyncClient( timeout=httpx.Timeout( - connect=10.0, - read=30.0, + 10.0, + connect=settings.client.timeout.connect, + read=settings.client.timeout.read, ), verify=False, ) as client: From b8d2f868cbb93d96ae1feada352d11ab750b40c7 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Fri, 24 Jul 2026 08:13:56 +0100 Subject: [PATCH 12/26] Filp patch ordering. --- src/client.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/client.py b/src/client.py index f869776..6d3d6aa 100644 --- a/src/client.py +++ b/src/client.py @@ -46,7 +46,7 @@ logger = logging.getLogger("uvicorn.error") logger.setLevel(logging.DEBUG) -patch_adapter = TypeAdapter(PartialItem | list[PatchOperation]) +patch_adapter = TypeAdapter(list[PatchOperation] | PartialItem) class TransactionClient(BaseTransactionsClient): @@ -278,7 +278,7 @@ async def patch_item( self, collection_id: str, item_id: str, - patch: PartialItem | list[PatchOperation], + patch: list[PatchOperation] | PartialItem, request: Request, ) -> Item | Response | None: logger.info("PATCH REQUEST: %s", patch) From 03e822cf38337ab26fd9ab347d7f9f6f2552e49c Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Fri, 24 Jul 2026 09:20:58 +0100 Subject: [PATCH 13/26] Update operation to partial item. --- src/client.py | 4 ++-- src/utils.py | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/src/client.py b/src/client.py index 6d3d6aa..f869776 100644 --- a/src/client.py +++ b/src/client.py @@ -46,7 +46,7 @@ logger = logging.getLogger("uvicorn.error") logger.setLevel(logging.DEBUG) -patch_adapter = TypeAdapter(list[PatchOperation] | PartialItem) +patch_adapter = TypeAdapter(PartialItem | list[PatchOperation]) class TransactionClient(BaseTransactionsClient): @@ -278,7 +278,7 @@ async def patch_item( self, collection_id: str, item_id: str, - patch: list[PatchOperation] | PartialItem, + patch: PartialItem | list[PatchOperation], request: Request, ) -> Item | Response | None: logger.info("PATCH REQUEST: %s", patch) diff --git a/src/utils.py b/src/utils.py index 624b3c9..b9895d7 100644 --- a/src/utils.py +++ b/src/utils.py @@ -57,7 +57,7 @@ def operation_to_partial_item(collection_id: str, operations: list[PatchOperatio path_parts = operation.path.lstrip("/").split("/") - if isinstance(path_parts[-1], int): + if isinstance(path_parts[-1], int) or path_parts[-1] == "-": path_parts.remove(-1) nest = [operation.value] From 87e20536834393658eba8fbc66f764800a2d1b41 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Fri, 24 Jul 2026 09:30:16 +0100 Subject: [PATCH 14/26] Switch to pop. --- src/utils.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/utils.py b/src/utils.py index b9895d7..e90a9e6 100644 --- a/src/utils.py +++ b/src/utils.py @@ -58,7 +58,7 @@ def operation_to_partial_item(collection_id: str, operations: list[PatchOperatio path_parts = operation.path.lstrip("/").split("/") if isinstance(path_parts[-1], int) or path_parts[-1] == "-": - path_parts.remove(-1) + path_parts.pop() nest = [operation.value] else: From 361977a4c967be007289b48e13e03fcbfd1e4dd7 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Fri, 24 Jul 2026 11:33:48 +0100 Subject: [PATCH 15/26] Update entitlements get. --- src/authorizer/egi_authorizer.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/authorizer/egi_authorizer.py b/src/authorizer/egi_authorizer.py index 65cf5ab..0e28bc4 100644 --- a/src/authorizer/egi_authorizer.py +++ b/src/authorizer/egi_authorizer.py @@ -89,7 +89,7 @@ async def dispatch(self, request: Request, call_next): ), ) - authorizer.add(token_info["entitlements"]) + authorizer.add(token_info.get("entitlements", [])) request.state.authorizer = authorizer From 2b8b35e72c654e8eaa607b9dfc97cef6c497934b Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Mon, 27 Jul 2026 09:20:25 +0100 Subject: [PATCH 16/26] Drop CMIP7 schema version to v1.2.8. --- src/settings/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/settings/__init__.py b/src/settings/__init__.py index f45f412..903c89f 100644 --- a/src/settings/__init__.py +++ b/src/settings/__init__.py @@ -55,7 +55,7 @@ "regex": [ r"https://esgf\.github\.io/stac-transaction-api/cmip7/v[0-9]\.[0-9]\.[0-9]/schema\.json" ], - "default": "https://esgf.github.io/stac-transaction-api/cmip7/v1.2.9/schema.json", + "default": "https://esgf.github.io/stac-transaction-api/cmip7/v1.2.8/schema.json", }, "alternate_assets": { "regex": [ From 3148aed62a26eda68e78efd1d968a469829d32dc Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Wed, 29 Jul 2026 09:04:35 +0100 Subject: [PATCH 17/26] Move validation to core utils. --- src/client.py | 17 ++- src/settings/__init__.py | 153 -------------------- src/utils.py | 304 --------------------------------------- 3 files changed, 10 insertions(+), 464 deletions(-) delete mode 100644 src/utils.py diff --git a/src/client.py b/src/client.py index f869776..39a23f1 100644 --- a/src/client.py +++ b/src/client.py @@ -26,6 +26,13 @@ RequesterData, ) from esgf_core_utils.models.kafka.producer import KafkaProducer +from esgf_core_utils.models.validation import ( + evaluate_patch, + operation_to_partial_item, + validate_extensions, + validate_patch, + validate_post, +) from fastapi import Request, Response, status from pydantic import TypeAdapter from stac_fastapi.extensions.transaction import BaseTransactionsClient @@ -34,12 +41,6 @@ from stac_pydantic.item import Item from settings import settings -from utils import ( - operation_to_partial_item, - validate_extensions, - validate_patch, - validate_post, -) # Setup logger # logger = logging.getLogger(__name__) @@ -294,10 +295,12 @@ async def patch_item( event_id = uuid.uuid4().hex request_id = headers.get("X-Request-ID", uuid.uuid4().hex) + role = evaluate_patch(patch) + auth = self.authorize( collection_id=collection_id, item=item, - role="UPDATE", + role=role, request=request, request_id=request_id, event_id=event_id, diff --git a/src/settings/__init__.py b/src/settings/__init__.py index 903c89f..aff83ee 100644 --- a/src/settings/__init__.py +++ b/src/settings/__init__.py @@ -9,159 +9,6 @@ else: from settings.globus import GlobusClientSettings as ClientSettings -DEFAULT_EXTENSIONS = { - "CMIP6": { - "CMIP6": { - "regex": [ - r"https://esgf\.github\.io/stac-transaction-api/cmip6/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://esgf.github.io/stac-transaction-api/cmip6/v2.0.0/schema.json", - }, - "alternate_assets": { - "regex": [ - r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", - }, - "file": { - "regex": [ - r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/file/v2.1.0/schema.json", - }, - }, - "CMIP6Plus": { - "CMIP6Plus": { - "regex": [ - r"https://esgf\.github\.io/stac-transaction-api/cmip6plus/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://esgf.github.io/stac-transaction-api/cmip6plus/v2.0.1/schema.json", - }, - "alternate_assets": { - "regex": [ - r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", - }, - "file": { - "regex": [ - r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/file/v2.1.0/schema.json", - }, - }, - "CMIP7": { - "CMIP7": { - "regex": [ - r"https://esgf\.github\.io/stac-transaction-api/cmip7/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://esgf.github.io/stac-transaction-api/cmip7/v1.2.8/schema.json", - }, - "alternate_assets": { - "regex": [ - r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", - }, - "file": { - "regex": [ - r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/file/v2.1.0/schema.json", - }, - }, - "INPUT4MIP": { - "INPUT4MIP": { - "regex": [ - r"https://esgf\.github\.io/stac-transaction-api/input4mips/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://esgf.github.io/stac-transaction-api/input4mips/v1.2.9/schema.json", - }, - "alternate_assets": { - "regex": [ - r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", - }, - "file": { - "regex": [ - r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/file/v3.0.0/schema.json", - }, - }, - "CORDEX-CMIP6": { - "CORDEX-CMIP6": { - "regex": [ - r"https://esgf\.github\.io/stac-transaction-api/cordex-cmip6/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://esgf.github.io/stac-transaction-api/cordex-cmip6/v1.2.1/schema.json", - }, - "alternate_assets": { - "regex": [ - r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", - }, - "file": { - "regex": [ - r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/file/v2.1.0/schema.json", - }, - }, - "obs4MIPs": { - "obs4MIPs": { - "regex": [ - r"https://esgf\.github\.io/stac-transaction-api/obs4mips/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://esgf.github.io/stac-transaction-api/obs4mips/v1.0.0/schema.json", - }, - "alternate_assets": { - "regex": [ - r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", - }, - "file": { - "regex": [ - r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/file/v2.1.0/schema.json", - }, - }, - "OBS4REF": { - "OBS4REF": { - "regex": [ - r"https://esgf\.github\.io/stac-transaction-api/obs4ref/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://esgf.github.io/stac-transaction-api/obs4ref/v1.0.1/schema.json", - }, - "alternate_assets": { - "regex": [ - r"https://stac-extensions\.github\.io/alternate-assets/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/alternate-assets/v1.2.0/schema.json", - }, - "file": { - "regex": [ - r"https://stac-extensions\.github\.io/file/v[0-9]\.[0-9]\.[0-9]/schema\.json" - ], - "default": "https://stac-extensions.github.io/file/v2.1.0/schema.json", - }, - }, -} - -VERSION_REGEX = re.compile( - r"/v(" - r"(?P0|[1-9]\d*)\." - r"(?P0|[1-9]\d*)\." - r"(?P0|[1-9]\d*)" - r"(?:-[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*)?" - r"(?:\+[0-9A-Za-z-]+(?:\.[0-9A-Za-z-]+)*)?" - r")/" -) - class Settings(BaseSettings): """ diff --git a/src/utils.py b/src/utils.py deleted file mode 100644 index e90a9e6..0000000 --- a/src/utils.py +++ /dev/null @@ -1,304 +0,0 @@ -import json -import logging -import re - -import httpx -import jsonschema -from esgf_core_utils.models.exceptions import ( - ExpectedExtensionsMissingException, - ExtensionBelowMinimumException, - OperationNotPermittedException, - STACValidationException, - UnexpectedExtensionException, -) -from jsonschema.protocols import Validator -from packaging.version import Version -from shapely.geometry import shape -from stac_fastapi.extensions.transaction.request import ( - PartialItem, - PatchAddReplaceTest, - PatchOperation, -) -from stac_pydantic.item import Item - -from settings import DEFAULT_EXTENSIONS, VERSION_REGEX - -# Setup logger -logger = logging.getLogger("uvicorn.error") - - -def operation_to_partial_item(collection_id: str, operations: list[PatchOperation]) -> PartialItem: - """Convert operations to partial item - - Args: - collection_id (str): ID of Item's Collection. - operations (list[PatchOperation]): List of operations to be converted to PartialItem - - Raises: - OperationNotPermittedException: Move & Copy operatations not permitted - - Returns: - PartialItem: Partial item equivalent to operations - """ - item = {} - - for operation in operations: - - if operation.op == "remove": - operation = PatchAddReplaceTest(op="add", path=operation.path, value=None) - - if operation.op in ["add", "replace"]: - if operation.path.lstrip("/") == "stac_extensions": - validate_extensions( - collection_id=collection_id, - item_extensions=operation.value, - strict=True, - ) - - path_parts = operation.path.lstrip("/").split("/") - - if isinstance(path_parts[-1], int) or path_parts[-1] == "-": - path_parts.pop() - nest = [operation.value] - - else: - nest = operation.value - - if isinstance(nest, list): - existing = item.copy() - for path_part in path_parts: - existing = existing.get(path_part, {}) - - if existing: - nest.extend(existing) - - for path_part in reversed(path_parts): - nest = {path_part: nest} - - item |= nest - - if operation.op in ["move", "copy"]: - # May need to update this for alternat asset updates - raise OperationNotPermittedException(op=operation.op) - - return PartialItem.model_validate(item) - - -def validate_extension_version(minimum: str, extension: str) -> None: - """Validate an extenions version is above the minimum. - - Args: - default (str): default extension with minimum version. - extension (str): extension to be validated. - - Raises: - ExtensionBelowMinimumException: extension below minimum - """ - - minimum_version = VERSION_REGEX.search(minimum).group(1) - extension_version = VERSION_REGEX.search(extension).group(1) - - if Version(extension_version) < Version(minimum_version): - raise ExtensionBelowMinimumException(extension=extension, minimum_version=f"v{minimum_version}") - - -def validate_extensions(collection_id: str, item_extensions: list[str], strict: bool = False) -> list[str]: - """Validate expected default extensions are present. - - Args: - collection_id (str): ID of Item's Collection. - item_extensions (list[str]): Given list of extensions. - strict (bool): if True Exception is raised if expected extensions are missing. - - Raises: - UnexpectedExtensionException: Unexpected extensions - ExpectedExtensionsMissingException: Expected extension missing - - Returns: - list[str]: list of extensions including defaults - """ - - expected_extensions = DEFAULT_EXTENSIONS.get(collection_id, {}).copy() - - for item_extension in item_extensions: - expected = False - for ( - expected_extension_key, - expected_extension, - ) in expected_extensions.copy().items(): - if any(re.compile(regex).match(str(item_extension)) for regex in expected_extension["regex"]): - expected_extensions.pop(expected_extension_key) - expected = True - - validate_extension_version(minimum=expected_extension["default"], extension=str(item_extension)) - - if not expected: - raise UnexpectedExtensionException(extension=item_extension) - - missing_extensions = [expected_extension["default"] for expected_extension in expected_extensions.values()] - - if strict & len(missing_extensions) > 0: - raise ExpectedExtensionsMissingException(extensions=missing_extensions) - - item_extensions.extend(missing_extensions) - - return item_extensions - - -def get_null_keys(item: PartialItem) -> tuple[PartialItem, set[str]]: - """Remove and list null value keys from PatialItem. - - Args: - item (dict): Item dictionary to be updated - - Returns: - tuple[dict, list[str]]: The PartialItem with nulls removed and list of null keys - """ - - def nested_null_keys(d: dict) -> tuple[dict, set[str]]: - null_keys = set() - for k, v in d.items(): - - if v is None: - del d[k] - null_keys.add(k) - - if isinstance(v, dict): - sub_dict, sub_null_keys = nested_null_keys(v) - null_keys.update(sub_null_keys) - d[k] = sub_dict - - return d, null_keys - - item_dict, null_keys = nested_null_keys(item.model_dump()) - item = PartialItem.model_validate(item_dict) - - return item, null_keys - - -def get_extension_validator(extension: str) -> Validator: - """Get JSON schema validator for an extension. - - Args: - extension (str): Extension URI - - Returns: - Validator: Validator for extension - """ - schema = httpx.get(extension).json() - # This block is cribbed (w/ change in error handling) from - # jsonschema.validate - cls = jsonschema.validators.validator_for(schema) - cls.check_schema(schema) - return cls(schema) - - -def validate_bbox(bbox: list[int | float]) -> None: - """Validate bounding box is WGS84 - - Args: - bbox (int | float): bounding box to be validated - - Raises: - STACValidationException: _description_ - """ - minx, miny, maxx, maxy = bbox[:4] - if not (-180.0 <= minx <= 180.0 and -180.0 <= maxx <= 180.0 and -90.0 <= miny <= 90.0 and -90.0 <= maxy <= 90.0): - raise STACValidationException() - - -def validate_geometry(geometry: dict) -> None: - """Validate GeoJSON geometry - - Args: - geometry (dict): geometry to be validation. - - Raises: - STACValidationException: Validation error - """ - geometry_shape = shape(geometry) - if not geometry_shape.is_valid: - raise STACValidationException() - - # Check geometry is WGS84 - validate_bbox(geometry_shape.bounds) - - -def validate_patch( - item_id: str, - item: PartialItem, - extensions: list[str], -) -> None: - """Validate a PartialItem patch request - - Args: - item_id (str): ID of the item to validate - item (PartialItem): Partial Item to be validated to validate - extensions (list[str]): List of STAC extensions to be validated against - - Raises: - STACValidationException: Validation error - UnexpectedExtensionException: Unexpect exception with validation - """ - if item.geometry: - validate_geometry(item.geometry) - - if item.bbox: - validate_bbox(item.bbox) - - item, null_keys = get_null_keys(item) - - for extension in extensions: - extension_validator = get_extension_validator(str(extension)) - - required_keys = set() - raise_errors = [] - for error in extension_validator.iter_errors(json.loads(item.model_dump_json())): - - if error.validator in ["oneOf"]: - continue - - elif error.validator == "required": - required_keys.add(json.dumps(error.validator_value)) - - else: - raise_errors.append(error) - - for null_key_error in required_keys & null_keys: - raise_errors.append(f"Variable {null_key_error} is required and cannot be removed") - - if raise_errors: - logger.error("STAC validation error: %s", item_id) - - raise STACValidationException() - - -def validate_post( - item_id: str, - item: Item, - extensions: list[str], -) -> None: - """Validate a Item post request - - Args: - item_id (str): ID of the item to validate - item (Item): Partial Item to be validated to validate - extensions (list[str]): List of STAC extensions to be validated against - - Raises: - STACValidationException: Validation error - """ - validate_geometry(item.geometry) - validate_bbox(item.bbox) - - for extension in extensions: - extension_validator = get_extension_validator(str(extension)) - - raise_errors = [] - for error in extension_validator.iter_errors(json.loads(item.model_dump_json())): - raise_errors.append(error) - - if raise_errors: - logger.error("STAC validation error: %s", item_id) - - raise STACValidationException() From 073e0a5e363dd835a38cf9c6dfbe3b51cdb77231 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Wed, 29 Jul 2026 09:05:32 +0100 Subject: [PATCH 18/26] Remove unused import. --- src/settings/__init__.py | 1 - 1 file changed, 1 deletion(-) diff --git a/src/settings/__init__.py b/src/settings/__init__.py index aff83ee..bf74232 100644 --- a/src/settings/__init__.py +++ b/src/settings/__init__.py @@ -1,5 +1,4 @@ import os -import re from typing import Literal from pydantic_settings import BaseSettings, SettingsConfigDict From 99dd567ce224a9633b583bf8aafb7720f411315e Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Wed, 29 Jul 2026 11:26:21 +0100 Subject: [PATCH 19/26] temporary remove core utils dependency. --- poetry.lock | 142 +----- pyproject.toml | 2 +- uv.lock | 1235 ++++++++++++++++++++++++++++++++++++++++++++++++ 3 files changed, 1238 insertions(+), 141 deletions(-) create mode 100644 uv.lock diff --git a/poetry.lock b/poetry.lock index 2c90772..fc8751a 100644 --- a/poetry.lock +++ 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+++++++++++------- src/client.py | 2 ++ 3 files changed, 14 insertions(+), 8 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index e7be403..ef3cf92 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,7 +9,7 @@ authors = [ ] readme = "README.md" dependencies = [ - # "esgf-core-utils>=1.1.0", + "esgf-core-utils>=1.2.0", "fastapi>=0.114.0", "jsonschema>=4.24.0", "packaging>=26.2", diff --git a/src/authorizer/egi_authorizer.py b/src/authorizer/egi_authorizer.py index 0e28bc4..b456261 100644 --- a/src/authorizer/egi_authorizer.py +++ b/src/authorizer/egi_authorizer.py @@ -55,13 +55,17 @@ async def dispatch(self, request: Request, call_next): if token := request.headers.get("authorization", "").removeprefix( "Bearer " ): - response = await client.post( - settings.client.introspection_endpoint, - headers={"Content-type": "application/x-www-form-urlencoded"}, - data=f"token={token}", - auth=auth, - ) - response.raise_for_status() + try: + response = await client.post( + 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@@ -10,6 +10,7 @@ authors = [ readme = "README.md" dependencies = [ # "esgf-core-utils>=1.2.0", + "esgf-core-utils@git+https://github.com/ESGF/esgf-core-utils@refs/pull/81/head", "fastapi>=0.114.0", "jsonschema>=4.24.0", "packaging>=26.2", diff --git a/src/authorizer/egi_authorizer.py b/src/authorizer/egi_authorizer.py index b456261..50e471c 100644 --- a/src/authorizer/egi_authorizer.py +++ b/src/authorizer/egi_authorizer.py @@ -52,9 +52,7 @@ async def dispatch(self, request: Request, call_next): "Post request to %s", settings.client.introspection_endpoint, ) - if token := request.headers.get("authorization", "").removeprefix( - "Bearer " - ): + if token := request.headers.get("authorization", "").removeprefix("Bearer "): try: response = await client.post( settings.client.introspection_endpoint, @@ -68,17 +66,13 @@ async def dispatch(self, request: Request, call_next): raise HTTPException(status_code=401) from exc else: - raise HTTPException( - status_code=401, detail="Missing or invalid bearer token" - ) + raise HTTPException(status_code=401, detail="Missing or invalid bearer token") token_info = response.json() logger.debug("Token info: %s", token_info) - if request.headers["host"] not in [ - urlparse(aud).hostname for aud in token_info["aud"] - ]: + if request.headers["host"] not in [urlparse(aud).hostname for aud in token_info["aud"]]: raise InvalidTokenAudienceException( token_audience=request.headers["host"], expected_audience=", ".join(token_info["aud"]), diff --git a/src/client.py b/src/client.py index c431175..d6399ab 100644 --- a/src/client.py +++ b/src/client.py @@ -39,8 +39,6 @@ from stac_fastapi.types.stac import Collection from stac_pydantic.item import Item -from settings import settings - # Setup logger # logger = logging.getLogger(__name__) logger = logging.getLogger("uvicorn.error") @@ -116,9 +114,7 @@ async def create_item( item_extensions = item.stac_extensions if item.stac_extensions else [] try: - item_extensions = validate_extensions( - collection_id=collection_id, item_extensions=item_extensions - ) + item_extensions = validate_extensions(collection_id=collection_id, item_extensions=item_extensions) validate_post( item_id=item.id, item=item, @@ -152,9 +148,7 @@ async def create_item( data = Data(type="STAC", payload=payload) - publisher = Publisher( - package=user_agent[0], version=user_agent[1] if len(user_agent) > 1 else "" - ) + publisher = Publisher(package=user_agent[0], version=user_agent[1] if len(user_agent) > 1 else "") metadata = Metadata( auth=auth, @@ -199,11 +193,7 @@ async def patch_item( ) -> Item | Response | None: logger.info("PATCH REQUEST: %s", patch) - item = ( - operation_to_partial_item(collection_id=collection_id, operations=patch) - if isinstance(patch, list) - else patch - ) + item = operation_to_partial_item(collection_id=collection_id, operations=patch) if isinstance(patch, list) else patch headers = request.headers.get("headers", {}) @@ -224,9 +214,7 @@ async def patch_item( item_extensions = item.stac_extensions if item.stac_extensions else [] try: - item_extensions = validate_extensions( - collection_id=collection_id, item_extensions=item_extensions - ) + item_extensions = validate_extensions(collection_id=collection_id, item_extensions=item_extensions) validate_patch( item_id=item_id, @@ -264,9 +252,7 @@ async def patch_item( data = Data(type="STAC", payload=payload) - publisher = Publisher( - package=user_agent[0], version=user_agent[1] if len(user_agent) > 1 else "" - ) + publisher = Publisher(package=user_agent[0], version=user_agent[1] if len(user_agent) > 1 else "") metadata = Metadata( auth=auth, event_id=event_id, diff --git a/src/settings/ceda.py b/src/settings/ceda.py index 38d5201..c3a1eaf 100644 --- a/src/settings/ceda.py +++ b/src/settings/ceda.py @@ -18,9 +18,7 @@ class CEDAClientSettings(BaseModel): client_id: str client_secret: str token_url: str = "https://aai.egi.eu/auth/realms/egi/protocol/openid-connect/token" - 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+0100 Subject: [PATCH 23/26] Add aud check. --- src/authorizer/egi_authorizer.py | 12 +++++++++--- 1 file changed, 9 insertions(+), 3 deletions(-) diff --git a/src/authorizer/egi_authorizer.py b/src/authorizer/egi_authorizer.py index 50e471c..5608bc5 100644 --- a/src/authorizer/egi_authorizer.py +++ b/src/authorizer/egi_authorizer.py @@ -52,7 +52,9 @@ async def dispatch(self, request: Request, call_next): "Post request to %s", settings.client.introspection_endpoint, ) - if token := request.headers.get("authorization", "").removeprefix("Bearer "): + if token := request.headers.get("authorization", "").removeprefix( + "Bearer " + ): try: response = await client.post( settings.client.introspection_endpoint, @@ -66,13 +68,17 @@ async def dispatch(self, request: Request, call_next): raise HTTPException(status_code=401) from exc else: - raise HTTPException(status_code=401, detail="Missing or invalid bearer token") + raise HTTPException( + status_code=401, detail="Missing or invalid bearer token" + ) token_info = response.json() logger.debug("Token info: %s", token_info) - if request.headers["host"] not in [urlparse(aud).hostname for aud in token_info["aud"]]: + if "aud" in token_info and request.headers["host"] not in [ + urlparse(aud).hostname for aud in token_info["aud"] + ]: raise InvalidTokenAudienceException( token_audience=request.headers["host"], expected_audience=", ".join(token_info["aud"]), From c3e43d4617d5ca407f3e1e679ac7312a5502892d Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Tue, 4 Aug 2026 15:05:24 +0100 Subject: [PATCH 24/26] Add patch role debug log. --- src/authorizer/egi_authorizer.py | 12 +++--------- src/client.py | 20 +++++++++----------- 2 files changed, 12 insertions(+), 20 deletions(-) diff --git a/src/authorizer/egi_authorizer.py b/src/authorizer/egi_authorizer.py index 5608bc5..1ae56b3 100644 --- a/src/authorizer/egi_authorizer.py +++ b/src/authorizer/egi_authorizer.py @@ -52,9 +52,7 @@ async def dispatch(self, request: Request, call_next): "Post request to %s", settings.client.introspection_endpoint, ) - if token := request.headers.get("authorization", "").removeprefix( - "Bearer " - ): + if token := request.headers.get("authorization", "").removeprefix("Bearer "): try: response = await client.post( settings.client.introspection_endpoint, @@ -68,17 +66,13 @@ async def dispatch(self, request: Request, call_next): raise HTTPException(status_code=401) from exc else: - raise HTTPException( - status_code=401, detail="Missing or invalid bearer token" - ) + raise HTTPException(status_code=401, detail="Missing or invalid bearer token") token_info = response.json() logger.debug("Token info: %s", token_info) - if "aud" in token_info and request.headers["host"] not in [ - urlparse(aud).hostname for aud in token_info["aud"] - ]: + if "aud" in token_info and request.headers["host"] not in [urlparse(aud).hostname for aud in token_info["aud"]]: raise InvalidTokenAudienceException( token_audience=request.headers["host"], expected_audience=", ".join(token_info["aud"]), diff --git a/src/client.py b/src/client.py index d6399ab..fe63c45 100644 --- a/src/client.py +++ b/src/client.py @@ -28,12 +28,12 @@ from esgf_core_utils.models.validation import ( evaluate_patch, operation_to_partial_item, + patch_adapter, validate_extensions, validate_patch, validate_post, ) from fastapi import Request, Response, status -from pydantic import TypeAdapter from stac_fastapi.extensions.transaction import BaseTransactionsClient from stac_fastapi.extensions.transaction.request import PartialItem, PatchOperation from stac_fastapi.types.stac import Collection @@ -44,8 +44,6 @@ logger = logging.getLogger("uvicorn.error") logger.setLevel(logging.DEBUG) -patch_adapter = TypeAdapter(PartialItem | list[PatchOperation]) - class TransactionClient(BaseTransactionsClient): @@ -112,9 +110,12 @@ async def create_item( except MissingPermissionException as exc: raise AuthorizationException(instance=f"{request_id}:{event_id}") from exc - item_extensions = item.stac_extensions if item.stac_extensions else [] try: - item_extensions = validate_extensions(collection_id=collection_id, item_extensions=item_extensions) + item_extensions = validate_extensions( + collection_id=collection_id, + item_extensions=item.stac_extensions or [], + ) + validate_post( item_id=item.id, item=item, @@ -202,6 +203,8 @@ async def patch_item( role = evaluate_patch(patch) + logger.debug("PATCH ROLE: %s", role) + auth = self.authorize( collection_id=collection_id, item=item, @@ -238,16 +241,11 @@ async def patch_item( user_agent = headers.get("user-agent", "/").split("/") - if isinstance(patch, list): - patch_body = [op.model_dump() for op in patch] - else: - patch_body = item.model_dump() - payload = PatchPayload( method="PATCH", collection_id=collection_id, item_id=item_id, - patch=patch_body, + patch=patch_adapter.dump_python(patch), ) data = Data(type="STAC", payload=payload) From c6a69ddd15112f71fac08de74075b2b9c73e07c3 Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Wed, 5 Aug 2026 09:46:09 +0100 Subject: [PATCH 25/26] Adding exta error logging. --- src/client.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/src/client.py b/src/client.py index fe63c45..7258dc1 100644 --- a/src/client.py +++ b/src/client.py @@ -168,7 +168,8 @@ async def create_item( ) except Exception as exc: - logger.error("Error producing message: %s", exc) + logger.error("Error producing message for %s: %s", item.id, exc) + logger.error("Item model dump: %s", item.model_dump_json()) raise UnknownException(instance=f"{request_id}:{event_id}") from exc return Response( From 66bcf09dd151e8ac4739e6396309cebd4fcc031e Mon Sep 17 00:00:00 2001 From: rhysrevans3 Date: Mon, 10 Aug 2026 11:33:02 +0100 Subject: [PATCH 26/26] Update exception handling. --- src/client.py | 36 ++++++++++++++++++------------------ 1 file changed, 18 insertions(+), 18 deletions(-) diff --git a/src/client.py b/src/client.py index 7258dc1..ef6f39c 100644 --- a/src/client.py +++ b/src/client.py @@ -131,13 +131,8 @@ async def create_item( ) as exc: logger.error("Error producing message for %s: %s", item.id, exc) logger.error("Item model dump: %s", item.model_dump_json()) - rfc_exc = RFC9457Exception() - rfc_exc.status_code = 400 - rfc_exc.type = exc.type - rfc_exc.title = exc.title - rfc_exc.detail = exc.detail - rfc_exc.instance = f"{request_id}:{event_id}" - raise rfc_exc from exc + exc.instance = f"{request_id}:{event_id}" + raise user_agent = headers.get("user-agent", "/").split("/") @@ -149,7 +144,9 @@ async def create_item( data = Data(type="STAC", payload=payload) - publisher = Publisher(package=user_agent[0], version=user_agent[1] if len(user_agent) > 1 else "") + publisher = Publisher( + package=user_agent[0], version=user_agent[1] if len(user_agent) > 1 else "" + ) metadata = Metadata( auth=auth, @@ -195,7 +192,11 @@ async def patch_item( ) -> Item | Response | None: logger.info("PATCH REQUEST: %s", patch) - item = operation_to_partial_item(collection_id=collection_id, operations=patch) if isinstance(patch, list) else patch + item = ( + operation_to_partial_item(collection_id=collection_id, operations=patch) + if isinstance(patch, list) + else patch + ) headers = request.headers.get("headers", {}) @@ -218,7 +219,9 @@ async def patch_item( item_extensions = item.stac_extensions if item.stac_extensions else [] try: - item_extensions = validate_extensions(collection_id=collection_id, item_extensions=item_extensions) + item_extensions = validate_extensions( + collection_id=collection_id, item_extensions=item_extensions + ) validate_patch( item_id=item_id, @@ -232,13 +235,8 @@ async def patch_item( UnexpectedExtensionException, ExtensionBelowMinimumException, ) as exc: - rfc_exc = RFC9457Exception() - rfc_exc.status_code = 400 - rfc_exc.type = exc.type - rfc_exc.title = exc.title - rfc_exc.detail = exc.detail - rfc_exc.instance = f"{request_id}:{event_id}" - raise rfc_exc from exc + exc.instance = f"{request_id}:{event_id}" + raise user_agent = headers.get("user-agent", "/").split("/") @@ -251,7 +249,9 @@ async def patch_item( data = Data(type="STAC", payload=payload) - publisher = Publisher(package=user_agent[0], version=user_agent[1] if len(user_agent) > 1 else "") + publisher = Publisher( + package=user_agent[0], version=user_agent[1] if len(user_agent) > 1 else "" + ) metadata = Metadata( auth=auth, event_id=event_id,