Update software.md

Author: mchaisso

_pages/software.md

@@ -10,38 +10,39 @@ seg_vamos:
     title: "vamos"
     excerpt: |
       STR and VNTR annotation by motif composition for PacBio and Oxford Nanopore reads, and assemblies. The vamos suite contains two components, one to characterize the repeat motifs in a population using an `efficient` motif set, a subset of motifs that preserves motif sequence diversity while removing rare motifs, and annotation software that uses wraparound dynamic programming to annotate samples using tandem repeat and motif databases.
-      "bioconda: vamos"  
-      "git: https://github.com/chaissonlab/vamos"
-      "publication:  https://link.springer.com/article/10.1186/s13059-023-03010-y"  
-      "authors: Jingwen Ren and [Bida Gu]({% link Bida_Gu.md %})"
+      "bioconda:" vamos  
+      "git:" https://github.com/chaissonlab/vamos
+      "publication:"  https://link.springer.com/article/10.1186/s13059-023-03010-y  
+      "authors:" Jingwen Ren and [Bida Gu]({% link Bida_Gu.md %})
+    
 seg_ctyper:
   - image_path: /software/ctyperlogo.png
     title: "ctyper"
     excerpt: |
       Ctyper is a genotyping approach for pangenomes to detect alleles that are shared between a biobank (short-read sequencing) sample and a long-read pangenome for challenging and copy-number variable regions of the genome.
-      "bioconda: ctyper"  
-      "git: https://github.com/chaissonlab/ctyper"  
-      "publication: https://www.nature.com/articles/s41588-025-02346-4"
-      "author: [Walfred Ma]({% link Walfred_ma.md %})"
+      "bioconda:" ctyper  
+      "git:" https://github.com/chaissonlab/ctyper  
+      "publication:" https://www.nature.com/articles/s41588-025-02346-4
+      "author:" [Walfred Ma]({% link Walfred_ma.md %})
     
 seg_lra:
   - image_path: /software/lra.png
     title: "LRA"
     excerpt: |
       Software for mapping long reads (PacBio/Oxford Nanopore) or their assemblies to genomes. LRA implements an exact convex gap penalty for biologically meaningful gaps to discover structural variation.  
-      "git: https://github.com/chaissonlab/lra"  
-      "bioconda: lra"  
-      "publication: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009078"
-      "author: Jingwen Ren"
+      "git:" https://github.com/chaissonlab/lra  
+      "bioconda:" lra  
+      "publication:" https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009078
+      "author:" Jingwen Ren
     
 seg_danbing-tk:
    - image_path: /software/danging-tk.png
      title: danbing-tk
      excerpt: |
         A method to map short-read sequences into locus-specific pangenome graphs implemented as de Bruijn graphs to estimate tandem repeat variation by length and composition.  
-     git: https://github.com/chaissonlab/danbing-tk
-     publications: https://genome.cshlp.org/content/33/4/511.short, https://www.nature.com/articles/s41467-021-24378-0
-     author: [Tony Tsung-Yu Lu]({% link tsungyu_lu.md %})
+     "git:" https://github.com/chaissonlab/danbing-tk
+     "publications:" https://genome.cshlp.org/content/33/4/511.short, https://www.nature.com/articles/s41467-021-24378-0
+     "author:" [Tony Tsung-Yu Lu]({% link tsungyu_lu.md %})
 
 ---
 {% include feature_row id="seg_ctyper" type="left" %}