From 5d416a0ed9ac3dd18d99fe896d93a49c0e369843 Mon Sep 17 00:00:00 2001
From: "41898282+github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Wed, 30 Sep 2026 16:41:21 +0000
Subject: [PATCH 1/2] =?UTF-8?q?chore:=20=F0=9F=A4=96=20prepare=20release?=
 =?UTF-8?q?=20v1.5.0?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 CHANGELOG.md | 2 +-
 CITATION.cff | 4 ++--
 VERSION      | 2 +-
 3 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 7ec9444..e5d8744 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,4 +1,4 @@
-## ASPEN development version
+## ASPEN 1.5.0
 
 - Add the missing `deeptools_plot` rule to generate the final `plotHeatmap`/`plotProfile` TSS and metagene PDFs from the `deeptools_mat` matrices, and wire these (plus the upstream `deeptools_prep`/`deeptools_mat` outputs) into `rule all` so `dryrun`/`run` actually schedule them; previously nothing requested these outputs so Snakemake silently never ran deepTools past matrix generation. Also fix `deeptools_mat` to use the workdir's configured genome's TSS BED archive (`config[GENOME]["tssBed"]`) instead of an always-hardcoded `hg38_tssbeds.tar.gz`, and drop the unused `{bedtype}` wildcard. Update `docs/outputs.md` to describe the actual output filenames/location (`results/deeptools/{group}.{bamtype}.{TSS,metagene}.{heatmap,profile}.pdf`) instead of the previously documented, never-implemented `protein_coding`/`all_samples` naming scheme. (#7, @kopardev)
 - Improve failed-run diagnostics by recording the failing Snakemake rule and command in `pipeline.status.json` and the human-readable `pipeline.failed` marker, so users can immediately see which step (for example, `deeptools_mat`) triggered the failure without digging through `snakemake.log` manually. (#000, @kopardev)
diff --git a/CITATION.cff b/CITATION.cff
index 02e74a6..e806b52 100644
--- a/CITATION.cff
+++ b/CITATION.cff
@@ -29,5 +29,5 @@ identifiers:
     type: doi
     value: 10.5281/zenodo.13755867
 doi: 10.5281/zenodo.13755867
-version: v1.4.0
-date-released: "2026-09-21"
+version: v1.5.0
+date-released: "2026-09-30"
diff --git a/VERSION b/VERSION
index c3f0d2b..bc80560 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-1.4.0-dev
+1.5.0

From 1bf7d4916e78f654c57cbea166d4218c99e57fba Mon Sep 17 00:00:00 2001
From: "41898282+github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Wed, 30 Sep 2026 20:30:53 +0000
Subject: [PATCH 2/2] chore: bump changelog & version after release of v1.5.0

---
 CHANGELOG.md | 2 ++
 VERSION      | 2 +-
 2 files changed, 3 insertions(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index e5d8744..f68fb71 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -1,3 +1,5 @@
+## ASPEN development version
+
 ## ASPEN 1.5.0
 
 - Add the missing `deeptools_plot` rule to generate the final `plotHeatmap`/`plotProfile` TSS and metagene PDFs from the `deeptools_mat` matrices, and wire these (plus the upstream `deeptools_prep`/`deeptools_mat` outputs) into `rule all` so `dryrun`/`run` actually schedule them; previously nothing requested these outputs so Snakemake silently never ran deepTools past matrix generation. Also fix `deeptools_mat` to use the workdir's configured genome's TSS BED archive (`config[GENOME]["tssBed"]`) instead of an always-hardcoded `hg38_tssbeds.tar.gz`, and drop the unused `{bedtype}` wildcard. Update `docs/outputs.md` to describe the actual output filenames/location (`results/deeptools/{group}.{bamtype}.{TSS,metagene}.{heatmap,profile}.pdf`) instead of the previously documented, never-implemented `protein_coding`/`all_samples` naming scheme. (#7, @kopardev)
diff --git a/VERSION b/VERSION
index bc80560..59b9db0 100644
--- a/VERSION
+++ b/VERSION
@@ -1 +1 @@
-1.5.0
+1.5.0-dev