biocomputelab.github.io/publications.html at master · BiocomputeLab/biocomputelab.github.io · GitHub

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---
title: Publications - Biocompute Lab
section: publications
---
{% include header.html %}
<main>
  <div class="container px-4 py-5">

    <h2 class="pb-2">Highlights</h2>

    <div class="row row-cols-1 row-cols-lg-3 align-items-stretch g-4 pb-4">
      <div class="col">
        <div class="card card-cover h-100 overflow-hidden text-white bg-dark rounded-5 shadow-lg" style="background-image: url('{{baseurl}}/images/publications/anima-techne.jpg');">
          <div class="d-flex flex-column h-100 p-5 pb-3 text-white text-shadow-3">
            <h4 class="pt-2 mt-3 mb-4 display-6 lh-1 fw-bold">Theory to engineer evolution</h4>
            <ul class="d-flex list-unstyled mt-auto">
              <li class="d-flex align-items-center me-3">
                <a href="https://doi.org/10.1038/s41467-021-23573-3"><small>Castle <i>et al. Nat Comms</i>, 2021</small></a>
              </li>
            </ul>
          </div>
        </div>
      </div>

      <div class="col">
        <div class="card card-cover h-100 overflow-hidden text-white bg-dark rounded-5 shadow-lg" style="background-image: url('{{baseurl}}/images/publications/tunable.jpg');">
          <div class="d-flex flex-column h-100 p-5 pb-3 text-white text-shadow-3">
            <h3 class="pt-2 mt-3 mb-4 display-6 lh-1 fw-bold">Tunable parts for adaptive circuits</h3>
            <ul class="d-flex list-unstyled mt-auto">
              <li class="d-flex align-items-center me-3">
                <a href="https://www.nature.com/articles/s41467-020-15653-7"><small>Bartoli <i>et al. Nat Comms</i>, 2020</small></a>
              </li>
            </ul>
          </div>
        </div>
      </div>

      <div class="col">
        <div class="card card-cover h-100 overflow-hidden text-white bg-dark rounded-5 shadow-lg" style="background-image: url('{{baseurl}}/images/publications/yeast-painting.jpg');">
          <div class="d-flex flex-column h-100 p-5 pb-3 text-shadow-3">
            <h4 class="pt-2 mt-3 mb-4 display-6 lh-1 fw-bold">Painting with yeast cells</h4>
            <ul class="d-flex list-unstyled mt-auto">
              <li class="d-flex align-items-center me-3">
                <a href="https://www.jove.com/video/59350"><small>Ciurkot <i>et al. JoVE</i>, 2019</small></a>
              </li>
            </ul>
          </div>
        </div>
      </div>
    </div>

    <h2 class="pb-2 py-5 border-bottom">Pre-prints</h2>
    {% for pub in site.data.publications %}
      {% if pub.status == "pre-print" %}
        <div class="row">
          <p class="publication"><a href="{{pub.preprint_url}}"><b>{{pub.title}}</b></a><br>
          {{ pub.authors | join: ", " }}<br>
          <i>{{pub.preprint_journal}}</i>, {{pub.preprint_year}}. (DOI: {{pub.preprint_doi}})
          {% if pub.preprint_doi == "" %}
          {% else %}<br><span style="filter: invert(90%)" class="altmetric-embed" data-hide-no-mentions="true" data-doi="{{pub.preprint_doi}}"></span>
          {% endif %}
          </p>
        </div>
      {% endif %}
    {% endfor %}

    <h2 class="pb-2 py-5 border-bottom">All publications</h2>
    {% assign loopyear = 9999 %}
    {% for pub in site.data.publications %}
      {% if loopyear > pub.year %}
        {% assign loopyear = pub.year %}
        <h4 class="py-3 bclcol1">{{ pub.year }}</h4>
      {% endif %}

      {% if loopyear == pub.year %}
      {% if pub.status != "pre-print" %}
        <div class="row">
          {% if pub.status == "in-press" %}
          <p class="publication"><span class="bclcol5"><b>{{pub.title}}</b></span><br>
          {% else %}<p class="publication"><a href="{{pub.url}}"><b>{{pub.title}}</b></a><br>
          {% endif %}
          {{ pub.authors | join: ", " }}<br>
          {% if pub.status == "online" %}<i>{{pub.journal}}</i>, {{pub.year}}. <i>(online)</i>
          {% elsif pub.status == "accepted" %}<i>{{pub.journal}}</i>, {{pub.year}}. <i>(accepted)</i>
          {% elsif pub.status == "in-press" %}<i>{{pub.journal}}</i>, {{pub.year}}. <i>(in press)</i>
          {% else %}<i>{{pub.journal}}</i> {{pub.volume}}, {{pub.pages}}, {{pub.year}}.
          {% endif %}
          <!-- Notes if they exist
          {% if pub.notes %}
          <ul class="publication-notes ">
            {% for note in pub.notes %}<li>{{note}}</li>{% endfor %}
          </ul>
          {% endif %}-->
          <!-- Altmetric badge -->
          {% if pub.doi == "" %}
          {% else %}<br><span style="filter: invert(90%)" class="altmetric-embed" data-hide-no-mentions="true" data-doi="{{pub.doi}}"></span>
          {% endif %}
          </p>
        </div>
      {% endif %}
      {% endif %}
    {% endfor %}

</main>
{% include footer.html %}