Issues

• Update to GATK 3.6

  BauerLab/ngsane#52 · Filter by author BauerLab opened on Jul 26, 2016

• Unable to export EC2 image

  BauerLab/ngsane#51 · Filter by author geopcgeo opened on May 4, 2016
  2

• SamVar

  BauerLab/ngsane#47 · Filter by author BauerLab opened on Oct 24, 2014 · 0.5.2.p1
  1

• non-standard characters in input files/folders

  bugenhancement
  BauerLab/ngsane#42 · Filter by author noncodo opened on Jul 28, 2014

• Brush up Annovar annotation for SNPs

  enhancement
  BauerLab/ngsane#39 · Filter by author BauerLab opened on Apr 23, 2014

• Consider using Cram or Bam adjustments to cut down on filesize

  enhancement
  BauerLab/ngsane#29 · Filter by author Gurado opened on Feb 7, 2014 · 0.6.0

• Breakdancer

  BauerLab/ngsane#18 · Filter by author BauerLab opened on Jan 15, 2014 · 0.6.0
  

• Recal needs .dict check

  BauerLab/ngsane#15 · Filter by author BauerLab opened on Nov 19, 2013

• Create bam2fastq module

  BauerLab/ngsane#14 · Filter by author BauerLab opened on Nov 12, 2013 · 0.6.0
  1

  

• checkpoint enhancement

  BauerLab/ngsane#12 · Filter by author noncodo opened on Sep 25, 2013

• Pipelines with keep

  enhancement
  BauerLab/ngsane#11 · Filter by author allPowerde opened on Sep 24, 2013
  1

• Capture resrouce consumption on html Summary

  enhancement
  BauerLab/ngsane#5 · Filter by author allPowerde opened on Aug 28, 2013