In the 'pydicer/pydicer/analyse/data.py', I think line 436 and 437 are not meant to be there as they are in the next loop to resample the mask to the image. Also having these lines messes with the actual resampling of an image as it resets the resample spacing to be whatever the image already is rather than what you specify in your settings. Sorry, I cannot work out how to create a pull request due being unable clone the repository on a computer that would allow pull requesting.
In the 'pydicer/pydicer/analyse/data.py', I think line 436 and 437 are not meant to be there as they are in the next loop to resample the mask to the image. Also having these lines messes with the actual resampling of an image as it resets the resample spacing to be whatever the image already is rather than what you specify in your settings. Sorry, I cannot work out how to create a pull request due being unable clone the repository on a computer that would allow pull requesting.