Skip to content

Issue installing allbiotc2 #8

@sukesh14

Description

@sukesh14

Dear Sir,

i downloaded the allbiotc2 using git. When i try with make install, it gives below errors. Can you please help me to install this software

ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
Install python packages for the pipeline
Reading package lists...
Building dependency tree...
Reading state information...
python-biopython is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
/home/sukesh/allbiotc2/pindel/Makefile:91: warning: overriding commands for target install' /home/sukesh/allbiotc2/breakdancer/Makefile:57: warning: ignoring old commands for target install'
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
/home/sukesh/allbiotc2/clever/Makefile:62: warning: overriding commands for target install' /home/sukesh/allbiotc2/pindel/Makefile:91: warning: ignoring old commands for target install'
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_1.fastq: No such file or directory
ls: cannot access *_2.fastq: No such file or directory
Reading package lists...
Building dependency tree...
Reading state information...
libboost-all-dev is already the newest version.
0 upgraded, 0 newly installed, 0 to remove and 16 not upgraded.
sudo: pip: command not found
make[1]: *** [install] Error 1
make: *** [install] Error 2

Thanks
Sukesh

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions