From 0847e24e7add336def2f97f0360233776d21cda8 Mon Sep 17 00:00:00 2001 From: Lucas MS Date: Tue, 29 Apr 2025 08:29:27 +0200 Subject: [PATCH] Update README.md improve annotation of phylogroup output to include the meaning of the 6th column --- README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/README.md b/README.md index 5c2609a..34a97fa 100644 --- a/README.md +++ b/README.md @@ -123,6 +123,8 @@ ROAR344_fergusonii.fasta ['trpA', 'trpBA', 'aesI'] ['-', '-', '-', '-'] [] Fergu * 3rd column : In the quadruplex column you will find a representation of presence(+)/absence(-) for the 4 genes described in [Clermont O, Christenson JK, Denamur E, Gordon DM. The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups](https://www.ncbi.nlm.nih.gov/pubmed/23757131). Respectively, arpA, chuA, yjaA and TspE4.C2 . * 4th column : When the quadruplex PCR give an ambiguity, this column show the alleles specific for groups C and E. * 5th column : final conclusion about phylogroup. +* 6th column : mash group of the sample. This prediction is only informative and is not used for phylogroup assignation. + ## Citing Please cite: